当前解析结果
SmilChr03G000016| 统一新 Gene ID | SmilChr03G000016 |
|---|---|
| 名称 | SmilChr03G000016 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 156690 - 159408 / + |
| NCBI Gene ID | LOC131015722 |
|---|---|
| GeneID | 131015722 |
| locus_tag | - |
| NCBI Name | LOC131015722 |
| 原始查询 | LOC131015722 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=32.4; qcov=0.784; evalue=3.59e-87; confidence=low |
| Rice | Os11g0681300- identity=26.9; qcov=0.927; evalue=3.25e-76; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0004803 (transposase activity); GO:0006313 (DNA transposition); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015722 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800125.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057800125.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057800125.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057800125.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057800125.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:157150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B24 |
Chr3:157222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B111,B48,B79,C36 |
Chr3:157281 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B25 |
Chr3:157281 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B25 |
Chr3:157363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr3:157365 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A7,C78 |
Chr3:157365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C78 |
Chr3:157389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B4,B55,C17 |
Chr3:157400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C8 |
Chr3:157480 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | A10,B107,B62,C7 |
Chr3:157480 |
GC |
G |
1bp_deletion | CDS_variant | 4 | A10,B107,B62,C7 |
Chr3:157520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800125.1PF03101
FAR1 47-141 aa
PF21056
ZSWIM1-3_RNaseH-like 234-343 aa
PF10551
MULE 263-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800125.1 |
Pfam | PF03101 |
FAR1 | Domain | 47 | 141 | 4.5e-16 | 60.1 | FAR1 DNA-binding domain |
XP_057800125.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 234 | 343 | 8.3e-12 | 45.9 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057800125.1 |
Pfam | PF10551 |
MULE | Domain | 263 | 354 | 5.9e-27 | 94.6 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。