Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000152`

染色体: Chr03 坐标: 1640738-1644278 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000152`
名称	SmilChr03G000152
描述	receptor-like protein 43
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1640738 - 1644278 / `-`

ID 对照

NCBI Gene ID	`LOC131015757`
GeneID	`131015757`
locus_tag	`-`
NCBI Name	`LOC131015757`
原始查询	`LOC131015757`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 43
产物	receptor-like protein 43
Arabidopsis	`AT2G15080` (RLP19) receptor like protein 19 [Source:NCBI gene (formerly Entrezgene);Acc:815997] identity=32.7; qcov=1.03; evalue=1.94e-128; confidence=low
Rice	`Os12g0222800` - identity=33.3; qcov=1.01; evalue=1.26e-122; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131015757

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800165.1`
2	Nucleus	细胞核	0.00000	`XP_057800165.1`
3	Chromosome	染色体	0.00000	`XP_057800165.1`
4	Centromere	着丝粒	0.00000	`XP_057800165.1`
5	Chromatin	染色质	0.00000	`XP_057800165.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1640888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C47
`Chr3:1641100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C43,C71
`Chr3:1641128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B31,B44,B46,B83
`Chr3:1641148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:1641224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B63,C26
`Chr3:1641235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B31,B44,B46,B63
`Chr3:1641239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B31,B44,B46
`Chr3:1641357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr3:1641371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A7,C24,C78,C85
`Chr3:1641395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B4,B61,B62
`Chr3:1641470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,D3
`Chr3:1641528`	`ATT`	`A`	2bp_deletion	frameshift_variant	55	A10,A16,A22,A24,B10,B102,B104,B105,B11,B113,B12,B125,B13,B131,B134,B135,B138,B14,B18,B25,B36,B49,B55,B6,B65,B67,B71,B72,B73,B79,B9,C12,C13,C19,C29,C31,C35,C37,C40,C43,C51,C55,C63,C64,C67,C70,C73,C74,C75,C83,C87,D3,D4,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800165.1

1038 aa

519

1038

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 35-75 aa PF13855 LRR_8 151-211 aa PF00560 LRR_1 152-174 aa PF00560 LRR_1 176-198 aa PF00560 LRR_1 200-221 aa PF00560 LRR_1 273-296 aa PF00560 LRR_1 298-320 aa PF00560 LRR_1 372-391 aa PF00560 LRR_1 443-464 aa PF13855 LRR_8 443-501 aa PF00560 LRR_1 466-488 aa PF00560 LRR_1 567-589 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 616-637 aa PF00560 LRR_1 665-686 aa PF00560 LRR_1 834-854 aa PF00560 LRR_1 856-877 aa PF00560 LRR_1 881-902 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800165.1`	Pfam	`PF08263`	LRRNT_2	Family	35	75	3.7e-09	37.4	Leucine rich repeat N-terminal domain
`XP_057800165.1`	Pfam	`PF13855`	LRR_8	Repeat	151	211	6.2e-50	167.5	Leucine rich repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	152	174	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	176	198	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	200	221	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	273	296	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	298	320	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	372	391	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	443	464	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF13855`	LRR_8	Repeat	443	501	6.2e-50	167.5	Leucine rich repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	466	488	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	567	589	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	591	612	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	616	637	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	665	686	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	834	854	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	856	877	1.1e-67	210.0	Leucine Rich Repeat
`XP_057800165.1`	Pfam	`PF00560`	LRR_1	Repeat	881	902	1.1e-67	210.0	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944182.1
ATGGAGAAAAAGCTTCATTGCATTTTGCTGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATTACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCGACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTATCTGCCTTGAATCTCTC...

CDS

1 records

下载 CDS FASTA

LOC131015757
ATGGAGAAAAAGCTTCATTGCATTTTGCTGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATTACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCGACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTATCTGCCTTGAATCTCTC...

Protein

1 records

下载 Protein FASTA

XP_057800165.1
MEKKLHCILLYAFLITITFPMLSSEAKAKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSTSVCTWIGVTCSLRHHRVSALNLSNMALSGTIPPQLGNLSFLVSLDLTNNLFYGDLPQELSLLRRSKFISFRLNNFTGDIPPMLGQLPKLEYLNLRSNNFIGSIPKSLSNLTNLQFLSLSNNSLSGEIPKELGRLQSLQTLYVQFNHLSGAIPSAIINISTLVAIALSNNELSGSLPTDMCSNLPYLAGIYVSSNQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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