当前解析结果
SmilChr03G000158| 统一新 Gene ID | SmilChr03G000158 |
|---|---|
| 名称 | SmilChr03G000158 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1724745 - 1726840 / - |
| NCBI Gene ID | LOC131015762 |
|---|---|
| GeneID | 131015762 |
| locus_tag | - |
| NCBI Name | LOC131015762 |
| 原始查询 | LOC131015762 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=28.4; qcov=0.76; evalue=2.1e-55; confidence=low |
| Rice | Os01g0852650- identity=30.2; qcov=0.646; evalue=3.5e-43; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0004803 (transposase activity); GO:0006313 (DNA transposition); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015762 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800171.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057800171.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800171.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800171.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800171.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1724810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,D11,D8 |
Chr3:1724819 |
AT |
A |
1bp_deletion | frameshift_variant | 45 | A16,A5,B1,B113,B120,B122,B125,B131,B135,B17,B2,B25,B26,B28,B29,B30,B36,B37,B53,B58,B72,B74,B75,B78,B79,B83,B85,B88,B92,C12,C16,C2,C4,C43,C46,C51,C52,C65,C7,C78,C79,C85,D10,D2,D9 |
Chr3:1724931 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B17,B79 |
Chr3:1724931 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B17,B79 |
Chr3:1724945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B54,C9 |
Chr3:1724950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,B54,C9 |
Chr3:1725017 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B139,C4 |
Chr3:1725017 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B139,C4 |
Chr3:1725044 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B107 |
Chr3:1725044 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B107 |
Chr3:1725047 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B43 |
Chr3:1725047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800171.1PF10551
MULE 165-256 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800171.1 |
Pfam | PF10551 |
MULE | Domain | 165 | 256 | 1.3e-24 | 87.1 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。