当前解析结果
SmilChr03G000252| 统一新 Gene ID | SmilChr03G000252 |
|---|---|
| 名称 | SmilChr03G000252 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2989413 - 2992142 / - |
| NCBI Gene ID | LOC131015790 |
|---|---|
| GeneID | 131015790 |
| locus_tag | - |
| NCBI Name | LOC131015790 |
| 原始查询 | LOC131015790 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.5; qcov=0.941; evalue=1.89e-67; confidence=low |
| Rice | Os07g0186500- identity=30.4; qcov=0.765; evalue=1.75e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015790 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057800197.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057800197.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800197.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800197.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800197.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2989429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr3:2989436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B32,C49,C56 |
Chr3:2989453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B95,C36,C45 |
Chr3:2989454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,C34 |
Chr3:2989477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B95,C36,C45 |
Chr3:2989480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr3:2989529 |
C |
CA |
1bp_insertion | frameshift_variant | 7 | A21,B29,B40,B46,C53,C61,C80 |
Chr3:2989546 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A10,A23,B107,B57,C1,C16,C24,C46,C87,D6 |
Chr3:2989547 |
A |
AAT |
2bp_insertion | frameshift_variant | 31 | A10,A20,A9,B100,B11,B112,B115,B119,B18,B2,B23,B30,B38,B55,B59,B83,B85,B86,B87,B91,B94,C35,C39,C42,C48,C52,C57,C63,C64,C71,D9 |
Chr3:2989548 |
T |
TG |
1bp_insertion | frameshift_variant | 7 | A10,A23,B107,C16,C24,C46,C87 |
Chr3:2989549 |
CTG |
C |
2bp_deletion | frameshift_variant | 14 | A20,B115,B119,B23,B38,B59,B83,B87,B91,B94,C48,C52,C71,D9 |
Chr3:2989551 |
GTA |
G |
2bp_deletion | frameshift_variant | 22 | A10,A23,A9,B100,B107,B11,B112,B18,B2,B30,B85,B86,C16,C24,C35,C39,C42,C46,C57,C63,C64,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800197.1PF00931
NB-ARC 204-367 aa
PF23559
WHD_DRP 452-522 aa
PF23598
LRR_14 574-768 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800197.1 |
Pfam | PF00931 |
NB-ARC | Domain | 204 | 367 | 4.1e-38 | 131.4 | NB-ARC domain |
XP_057800197.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 452 | 522 | 3.8e-18 | 66.0 | Disease resistance protein Winged helix domain |
XP_057800197.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 768 | 6.8e-21 | 75.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。