当前解析结果
SmilChr03G000273| 统一新 Gene ID | SmilChr03G000273 |
|---|---|
| 名称 | SmilChr03G000273 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3115970 - 3118648 / - |
| NCBI Gene ID | LOC131015804 |
|---|---|
| GeneID | 131015804 |
| locus_tag | - |
| NCBI Name | LOC131015804 |
| 原始查询 | LOC131015804 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.2; qcov=0.993; evalue=2.71e-66; confidence=low |
| Rice | Os07g0186500- identity=30.6; qcov=0.778; evalue=4.58e-75; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015804 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057800210.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057800210.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800210.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800210.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3116038 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | C52 |
Chr3:3116038 |
C |
CA |
1bp_insertion | CDS_variant | 1 | C52 |
Chr3:3116040 |
T |
TTG |
2bp_insertion | frameshift_variant | 28 | A3,A9,B102,B106,B107,B11,B118,B122,B19,B34,B38,B70,B9,C1,C11,C13,C22,C24,C26,C37,C47,C56,C69,C73,C78,C85,C86,D7 |
Chr3:3116042 |
TAA |
T |
2bp_deletion | frameshift_variant | 29 | A3,A9,B102,B106,B107,B11,B118,B122,B19,B34,B38,B70,B9,C1,C11,C13,C22,C24,C26,C37,C47,C52,C56,C69,C73,C78,C85,C86,D7 |
Chr3:3116076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B5,B57,C46 |
Chr3:3116127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr3:3116135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr3:3116144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:3116161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr3:3116194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B58,B7,C4 |
Chr3:3116208 |
A |
AAG |
2bp_insertion | frameshift_variant | 1 | C21 |
Chr3:3116208 |
A |
AAG |
2bp_insertion | CDS_variant | 1 | C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800210.1PF00931
NB-ARC 178-338 aa
PF23559
WHD_DRP 424-494 aa
PF23598
LRR_14 546-835 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800210.1 |
Pfam | PF00931 |
NB-ARC | Domain | 178 | 338 | 3e-40 | 138.4 | NB-ARC domain |
XP_057800210.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 424 | 494 | 2.9e-16 | 60.0 | Disease resistance protein Winged helix domain |
XP_057800210.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 546 | 835 | 1.1e-18 | 67.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。