当前解析结果
SmilChr03G000278| 统一新 Gene ID | SmilChr03G000278 |
|---|---|
| 名称 | SmilChr03G000278 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3160443 - 3163031 / - |
| NCBI Gene ID | LOC131015808 |
|---|---|
| GeneID | 131015808 |
| locus_tag | - |
| NCBI Name | LOC131015808 |
| 原始查询 | LOC131015808 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.3; qcov=1.02; evalue=1.77e-66; confidence=low |
| Rice | Os07g0186500- identity=30.1; qcov=0.809; evalue=1.58e-74; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015808 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057800213.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057800213.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057800213.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800213.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3160458 |
C |
CAA |
2bp_insertion | frameshift_variant | 9 | B115,B132,B16,B3,B56,B96,C79,D5,D9 |
Chr3:3160482 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B102,B103,B133,C79 |
Chr3:3160482 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B102,B103,B133,C79 |
Chr3:3160493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C68 |
Chr3:3160497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B40,C31 |
Chr3:3160547 |
C |
CAG |
2bp_insertion | frameshift_variant | 13 | A4,B126,B2,B49,C19,C22,C27,C32,C42,C45,C52,C65,C68 |
Chr3:3160548 |
CAT |
C |
2bp_deletion | frameshift_variant | 13 | A4,B126,B2,B49,C19,C22,C27,C32,C42,C45,C52,C65,C68 |
Chr3:3160560 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 12 | A22,B103,B109,B119,B120,B127,B28,B68,B87,B96,C72,D5 |
Chr3:3160561 |
C |
CA |
1bp_insertion | frameshift_variant | 54 | A14,A24,A6,B100,B111,B115,B129,B132,B133,B137,B15,B16,B18,B2,B21,B22,B24,B29,B3,B38,B40,B46,B53,B55,B56,B6,B63,B64,B7,B70,B71,B73,B77,B78,B95,B96,B98,C12,C13,C21,C24,C28,C31,C38,C51,C63,C67,C69,C70,C77,C79,C85,D10,D6 |
Chr3:3160567 |
AC |
A |
1bp_deletion | frameshift_variant | 68 | A14,A18,A22,A6,A8,B100,B103,B109,B110,B111,B115,B119,B120,B127,B129,B132,B133,B137,B15,B2,B21,B22,B24,B28,B29,B3,B38,B40,B44,B45,B46,B47,B53,B55,B6,B64,B65,B68,B7,B70,B71,B73,B78,B87,B95,B96,B98,C12,C13,C20,C21,C24,C28,C31,C38,C51,C56,C63,C67,C69,C70,C71,C72,C79,C85,D10,D5,D6 |
Chr3:3160584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:3160598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800213.1PF00931
NB-ARC 157-322 aa
PF13401
AAA_22 170-260 aa
PF23559
WHD_DRP 407-477 aa
PF23598
LRR_14 529-726 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800213.1 |
Pfam | PF00931 |
NB-ARC | Domain | 157 | 322 | 7.7e-40 | 137.0 | NB-ARC domain |
XP_057800213.1 |
Pfam | PF13401 |
AAA_22 | Domain | 170 | 260 | 2.5e-07 | 31.8 | AAA domain |
XP_057800213.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 407 | 477 | 7.5e-17 | 61.9 | Disease resistance protein Winged helix domain |
XP_057800213.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 529 | 726 | 4.1e-20 | 72.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。