Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000273

染色体: Chr01 坐标: 5443058-5444817 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000273
名称SmilChr01G000273
描述uncharacterized SmilChr01G000273
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向5443058 - 5444817 / +

ID 对照

NCBI Gene IDLOC131015815
GeneID131015815
locus_tag-
NCBI NameLOC131015815
原始查询LOC131015815

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述GATA transcription factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839492]; symbol=AT1G02700; hit=AT1G02700; species=arabidopsis; confidence=high
产物GATA transcription factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839492]; symbol=AT1G02700; hit=AT1G02700; species=arabidopsis; confidence=high
ArabidopsisAT1G02700 (AT1G02700)
GATA transcription factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839492]
identity=45.3; qcov=1.12; evalue=1.72e-53; confidence=high
RiceOs07g0675200 (OsEnS-114)
-
identity=32.3; qcov=0.899; evalue=2.19e-11; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131015815

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057800223.1
2 Mitochondrion matrix 线粒体基质 0.60000 XP_057800223.1
3 Nucleus 细胞核 0.00000 XP_057800223.1
4 Chromosome 染色体 0.00000 XP_057800223.1
5 Centromere 着丝粒 0.00000 XP_057800223.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:5443149 G A EMS_canonical_SNV CDS_variant 4 A1,B105,C21,C73
Chr1:5443194 G A EMS_canonical_SNV CDS_variant 1 B65
Chr1:5443227 G A EMS_canonical_SNV CDS_variant 4 A1,B105,C21,C73
Chr1:5444341 G A EMS_canonical_SNV CDS_variant 1 B78
Chr1:5444425 G A EMS_canonical_SNV CDS_variant 1 B136
Chr1:5444455 G A EMS_canonical_SNV CDS_variant 5 A1,B105,C21,C73,C86
Chr1:5444545 G A EMS_canonical_SNV CDS_variant 3 B138,B55,B65
Chr1:5444559 G A EMS_canonical_SNV CDS_variant 1 B12
Chr1:5444588 G A EMS_canonical_SNV CDS_variant 2 B138,B55
Chr1:5444597 G A EMS_canonical_SNV CDS_variant 1 C7
Chr1:5444601 G A EMS_canonical_SNV CDS_variant 3 B19,B27,C37

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057944240.1
AAGACAATATTCGAAGCAGGTAGCGTTAGTGAGATCGCACAGGGGGAAAATGCAATCCAGATTTGCCGTCACCGCCGCCAAATTCAACCACGCTCTGTTTCCGGCGAGGAGGATACGCAGCTGCGCCTCCACTTCCGGCAGAACTGCTGATCCAGCTGAGCACGCCGTCGACGAAGAAGATGTGTATCCCACCGATGCGATGCAAGACGAGAAGCGGCGGCGGCCGCCGAAGCACGAGCCGACAAGCAAAGACAACGAAA...

CDS

1 records

下载 CDS FASTA
LOC131015815
ATGCAATCCAGATTTGCCGTCACCGCCGCCAAATTCAACCACGCTCTGTTTCCGGCGAGGAGGATACGCAGCTGCGCCTCCACTTCCGGCAGAACTGCTGATCCAGCTGAGCACGCCGTCGACGAAGAAGATGTGTATCCCACCGATGCGATGCAAGACGAGAAGCGGCGGCGGCCGCCGAAGCACGAGCCGACAAGCAAAGACAACGAAACGTACTCTCCTCCGAAATCCCCAACTGAAACGGCGGCAAAGCTAGAGTC...

Protein

1 records

下载 Protein FASTA
XP_057800223.1
MQSRFAVTAAKFNHALFPARRIRSCASTSGRTADPAEHAVDEEDVYPTDAMQDEKRRRPPKHEPTSKDNETYSPPKSPTETAAKLESSGVGPRTDPIGQQKRRSCAGIGSSPWPAKEDEVDRRAQGEEQERDNKEYFEHHKASPLSEIEVCDTRKPVSQATDGTAQSETVGGWRPEQLDTAEDSLRRAVEIFRMNAMRGDPNSPHGRVLRQLRGEDW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器