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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004758

染色体: Chr03 坐标: 64694973-64702313 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004758
名称SmilChr03G004758
描述DNA gyrase subunit A, chloroplastic/mitochondrial-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向64694973 - 64702313 / +

ID 对照

NCBI Gene IDLOC131015819
GeneID131015819
locus_tag-
NCBI NameLOC131015819
原始查询LOC131015819

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DNA gyrase subunit A, chloroplastic/mitochondrial-like
产物DNA gyrase subunit A%2C chloroplastic/mitochondrial-like
ArabidopsisAT3G10690 (GYRA)
DNA GYRASE A [Source:NCBI gene (formerly Entrezgene);Acc:820238]
identity=80.4; qcov=0.842; evalue=2.72e-116; confidence=high
Rice-
-
GOGO:0003677 (DNA binding); GO:0003918 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006265 (DNA topological change); GO:0009330 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex)
KEGG-
PfamPF00521 (DNA_topoisoIV); PF20667 (Sec10_N)
InterPro-
eggNOG-
NRGeneID:131015819

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057800230.1
2 Cytosol 细胞质基质 0.60000 XP_057800235.1
3 Mitochondrion 线粒体 0.20000 XP_057800234.1
4 Nucleolus 核仁 0.20000 XP_057800235.1
5 Nucleus 细胞核 0.00000 XP_057800230.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:64696536 C T EMS_canonical_SNV CDS_variant 3 B101,B117,B74
Chr3:64696547 C T EMS_canonical_SNV CDS_variant 5 B22,B33,B39,B88,D4
Chr3:64696992 G A EMS_canonical_SNV CDS_variant 1 C38
Chr3:64697021 TA T 1bp_deletion frameshift_variant 2 B32,C28
Chr3:64697021 TA T 1bp_deletion CDS_variant 2 B32,C28
Chr3:64697051 C T EMS_canonical_SNV CDS_variant 2 B135,B139
Chr3:64697068 C T EMS_canonical_SNV CDS_variant 1 D11
Chr3:64697078 G A EMS_canonical_SNV CDS_variant 1 B13
Chr3:64697739 C T EMS_canonical_SNV CDS_variant 1 B122
Chr3:64697757 C T EMS_canonical_SNV CDS_variant 2 C27,D7
Chr3:64698095 C T EMS_canonical_SNV stop_gained 4 B106,B115,B20,B62
Chr3:64698095 C T EMS_canonical_SNV CDS_variant 4 B106,B115,B20,B62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800230.1
344 aa
N
1
172
344
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800231.1
344 aa
N
1
172
344
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800232.1
344 aa
N
1
172
344
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800233.1
344 aa
N
1
172
344
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800234.1
342 aa
N
1
171
342
DNA_topoisoIV
Sec10_N
C
PF00521 DNA_topoisoIV 2-218 aa PF20667 Sec10_N 257-305 aa
XP_057800235.1
271 aa
N
1
136
271
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800236.1
266 aa
N
1
133
266
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800237.1
266 aa
N
1
133
266
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800238.1
262 aa
N
1
131
262
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
XP_057800239.1
260 aa
N
1
130
260
DNA_topoisoIV
C
PF00521 DNA_topoisoIV 2-218 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800230.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 3.4e-71 241.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800231.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 3.4e-71 241.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800232.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 3.4e-71 241.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800233.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 3.4e-71 241.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800234.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 3.4e-71 241.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800234.1 Pfam PF20667 Sec10_N Repeat 257 305 7.7e-08 33.2 Exocyst complex component Sec10, N-terminal
XP_057800235.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 1.7e-71 242.1 DNA gyrase/topoisomerase IV, subunit A
XP_057800236.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 1.6e-71 242.2 DNA gyrase/topoisomerase IV, subunit A
XP_057800237.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 1.6e-71 242.2 DNA gyrase/topoisomerase IV, subunit A
XP_057800238.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 1.5e-71 242.2 DNA gyrase/topoisomerase IV, subunit A
XP_057800239.1 Pfam PF00521 DNA_topoisoIV Domain 2 218 1.5e-71 242.3 DNA gyrase/topoisomerase IV, subunit A

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

19 records

下载 cDNA FASTA
XR_009098686.1
GATGCAAATTTGGGCTGTTGGGCCGAAAATTTAAATGTTAGTAATCTTGGGCCGCTTAGAGTGCCGAACTTATGACCGTTGGGTGAACACTTGGGCTGAAGTAAAAGGAAGGGTAGGACACTAGGGTTCGAGAGACGCCTGTCGGGCGCCTTCTCCCTTCCCCTCTCTTTCGCTTGCCACCGAGGGTTTCATTTGGAGAAGGCGAATTGACGGTGCATATTGACGGGTGAAAAGCGGTCGGGTGGGAAATGAGGCAGACG...
XR_009098688.1
TGCAAATTTGGGCTGTTGGGCCGAAAATTTAAATGTTAGTAATCTTGGGCCGCTTAGAGTGCCGAACTTATGACCGTTGGGTGAACACTTGGGCTGAAGTAAAAGGAAGGGTAGGACACTAGGGTTCGAGAGACGCCTGTCGGGCGCCTTCTCCCTTCCCCTCTCTTTCGCTTGCCACCGAGGGTTTCATTTGGAGAAGGCGAATTGACGGTGCATATTGACGGGTGAAAAGCGGTCGGGTGGGAAATGAGGCAGACGCA...

CDS

10 records

下载 CDS FASTA
LOC131015819
ATGTGTTACACAGAGTGCAGGCTGGAGGCACTCACGGAGGCCATGTTATTGGCAGATTTGGAGCAAGATACGGTTGATTTTGTTCCAAACTTTGATAATTCACAAAAAGAACCATCTCTGCTTCCTGTTCGCATCCCCAACTTGCTATTAAATGGTTCTTCAGGGATTGCGGTTGGAATGGCTACCAATATTCCACCGCATAATCTTGGGGAGTTGGTAGATGCACTTTCCGTGCTGATTCACGATCCCGATGCAACGTT...
LOC131015819
ATGTGTTACACAGAGTGCAGGCTGGAGGCACTCACGGAGGCCATGTTATTGGCAGATTTGGAGCAAGATACGGTTGATTTTGTTCCAAACTTTGATAATTCACAAAAAGAACCATCTCTGCTTCCTGTTCGCATCCCCAACTTGCTATTAAATGGTTCTTCAGGGATTGCGGTTGGAATGGCTACCAATATTCCACCGCATAATCTTGGGGAGTTGGTAGATGCACTTTCCGTGCTGATTCACGATCCCGATGCAACGTT...

Protein

10 records

下载 Protein FASTA
XP_057800230.1
MCYTECRLEALTEAMLLADLEQDTVDFVPNFDNSQKEPSLLPVRIPNLLLNGSSGIAVGMATNIPPHNLGELVDALSVLIHDPDATLQELLEYMPGPDFPTGGIIIGNIGILDAYRTGRGRVVVRGKTDIELLDPKSKRLAIIIKEIPYQTNKASRVEKIAELVENKNLEGISDIRDESDRSGMRIVIELKRGSKPSIVLNNLYFLTALQSAFSCNMVGYGSVENLKETNNGTRTGRFSKSPSTDPYLLVLVIDDFKLEK...
XP_057800231.1
MCYTECRLEALTEAMLLADLEQDTVDFVPNFDNSQKEPSLLPVRIPNLLLNGSSGIAVGMATNIPPHNLGELVDALSVLIHDPDATLQELLEYMPGPDFPTGGIIIGNIGILDAYRTGRGRVVVRGKTDIELLDPKSKRLAIIIKEIPYQTNKASRVEKIAELVENKNLEGISDIRDESDRSGMRIVIELKRGSKPSIVLNNLYFLTALQSAFSCNMVGYGSVENLKETNNGTRTGRFSKSPSTDPYLLVLVIDDFKLEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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