当前解析结果
SmilChr03G002637| 统一新 Gene ID | SmilChr03G002637 |
|---|---|
| 名称 | SmilChr03G002637 |
| 描述 | protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 41954121 - 41957518 / - |
| NCBI Gene ID | LOC131015828 |
|---|---|
| GeneID | 131015828 |
| locus_tag | - |
| NCBI Name | LOC131015828 |
| 原始查询 | LOC131015828 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic |
| 产物 | protein TRIGALACTOSYLDIACYLGLYCEROL 4%2C chloroplastic |
| Arabidopsis | AT2G44640 (AT2G44640)TRIGALACTOSYLDIACYLGLYCEROL-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819072] identity=56.5; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0251000- identity=36.6; qcov=1.01; evalue=3.29e-91; confidence=medium |
| GO | GO:0009941 (chloroplast envelope); GO:0034196 (acylglycerol transport); GO:0070300 (phosphatidic acid binding); GO:1990052 (ER to chloroplast lipid transport) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057800248.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057800248.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800248.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800248.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800248.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:41954435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C3,C40 |
Chr3:41954541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:41954724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr3:41954780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B46,B94,C26,C59,D6 |
Chr3:41954939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:41955511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,C32 |
Chr3:41955704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C53,D2 |
Chr3:41956480 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B53 |
Chr3:41956480 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B53 |
Chr3:41956482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:41957083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B117,B20,C1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。