当前解析结果
SmilChr03G002659| 统一新 Gene ID | SmilChr03G002659 |
|---|---|
| 名称 | SmilChr03G002659 |
| 描述 | putative ABC transporter C family member 15 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42257146 - 42264336 / + |
| NCBI Gene ID | LOC131015845 |
|---|---|
| GeneID | 131015845 |
| locus_tag | - |
| NCBI Name | LOC131015845 |
| 原始查询 | LOC131015845 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative ABC transporter C family member 15 |
| 产物 | putative ABC transporter C family member 15 |
| Arabidopsis | AT3G60160 (ABCC9)multidrug resistance-associated protein 9 [Source:NCBI gene (formerly Entrezgene);Acc:825186] identity=66.3; qcov=0.986; evalue=0; confidence=high |
| Rice | Os04g0588700 (OsABCC7)- identity=58.5; qcov=0.859; evalue=0; confidence=high |
| GO | GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057800271.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057800271.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057800271.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800271.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42257340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B140,B55,B83,C8 |
Chr3:42259515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:42259896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B40 |
Chr3:42260007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B80,C42,C83 |
Chr3:42260049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:42260241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C83 |
Chr3:42260511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B6,C34,C58 |
Chr3:42260574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:42260579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B6,C34,C58 |
Chr3:42260920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:42261266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:42261725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800271.1PF00664
ABC_membrane 313-580 aa
PF00005
ABC_tran 646-780 aa
PF00664
ABC_membrane 943-1184 aa
PF00005
ABC_tran 1274-1422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800271.1 |
Pfam | PF00664 |
ABC_membrane | Family | 313 | 580 | 5.4e-63 | 214.0 | ABC transporter transmembrane region |
XP_057800271.1 |
Pfam | PF00005 |
ABC_tran | Domain | 646 | 780 | 2.9e-49 | 167.9 | ABC transporter |
XP_057800271.1 |
Pfam | PF00664 |
ABC_membrane | Family | 943 | 1184 | 5.4e-63 | 214.0 | ABC transporter transmembrane region |
XP_057800271.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1274 | 1422 | 2.9e-49 | 167.9 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。