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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr03G002679

Chromosome: Chr03 Coordinates: 42584714-42588608 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr03G002679
NameSmilChr03G002679
Descriptionent-kaurenoic acid oxidase 1-like
Chromosome / SeqIDChr03 / NC_080389.1
Coordinates and Strand42584714 - 42588608 / +

ID Mapping

NCBI Gene IDLOC131015858
GeneID131015858
locus_tag-
NCBI NameLOC131015858
Original queryLOC131015858

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Descriptionent-kaurenoic acid oxidase 1-like
Productent-kaurenoic acid oxidase 1-like
ArabidopsisAT1G05160 (CYP88A3)
cytochrome P450, family 88, subfamily A, polypeptide 3 [Source:NCBI gene (formerly Entrezgene);Acc:839311]
identity=70.7; qcov=0.98; evalue=0; confidence=high
RiceOs06g0110000 (OsKAO)
-
identity=57; qcov=0.959; evalue=0; confidence=high
GOGO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0007275 (multicellular organism development); GO:0010268 (brassinosteroid homeostasis); GO:0016125 (sterol metabolic process); GO:0016132 (brassinosteroid biosynthetic process); GO:0020037 (heme binding); GO:0051777 (ent-kaurenoic acid monooxygenase activity)
KEGGsmil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00067 (p450)
InterPro-
eggNOG-
NRGeneID:131015858

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057800281.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057800281.1
3 Nucleus 细胞核 0.00000 XP_057800281.1
4 Chromosome 染色体 0.00000 XP_057800281.1
5 Centromere 着丝粒 0.00000 XP_057800281.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr3:42585554 G A EMS_canonical_SNV CDS_variant 1 B28
Chr3:42585713 C T EMS_canonical_SNV CDS_variant 4 B16,B21,B79,C74
Chr3:42586898 G A EMS_canonical_SNV stop_gained 10 B100,B110,B119,B18,B59,B6,B95,C10,C25,C47
Chr3:42586910 G A EMS_canonical_SNV CDS_variant 5 A8,B108,B5,B57,C23
Chr3:42586943 G A EMS_canonical_SNV CDS_variant 2 B85,C44
Chr3:42586950 G A EMS_canonical_SNV CDS_variant 2 B46,D3
Chr3:42586984 C T EMS_canonical_SNV CDS_variant 1 B135
Chr3:42586986 G A EMS_canonical_SNV CDS_variant 1 B22
Chr3:42587033 C T EMS_canonical_SNV CDS_variant 2 C72,D9
Chr3:42587093 G A EMS_canonical_SNV CDS_variant 2 B121,C26
Chr3:42587233 G A EMS_canonical_SNV CDS_variant 5 B33,B69,C37,C72,D9
Chr3:42587341 C T EMS_canonical_SNV CDS_variant 2 B44,C2

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057800281.1
488 aa
N
1
244
488
p450
C
PF00067 p450 41-458 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057800281.1 Pfam PF00067 p450 Domain 41 458 2.4e-63 215.2 Cytochrome P450

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057944298.1
AAAATCGAAGAACTGGAAGCAGCACCACCGTCAAAATCACCGGTGTAAATCGGAAATCTTGCACACCTTCAAGTTGAGTTGCTCAGACCTTTTCTATTTTTTCGTCGTTATTTCTTGTTCTTCCAAATACATTATCAGTCCAAATTAAGTTGAAGTTTCACATGGTTATGGGTAGGCCACTTAAACGAGTAACATCCACCATTTCTTTTCTTGATGGCCCCCATAGATTTAAACTGAGTGGAACAACAAGAAGCTTTTCA...

CDS

1 records

Download CDS FASTA
LOC131015858
ATGATGGGGTGGGGGTTATGGGTAGTGGGGTGTTGTTTTGTGTTGATTGTGAGGTGGGTGTTGAGGAGGGTGAATGGGTGGTGTTATGAGAGGAAGTTAGGAGAGAGAAGGTATGAACTGCCACCAGGTGATCTTGGTTGGCCTTTCATTGGCAATATGTGGTCCTTCCTCAGAGCTTTCAAGTGCAGCAGACCTGAATCTTTCATCTCCTCTTTTGTTGACAGATATGGGCATGGTGGAATGTATAAAGTTCACATGTT...

Protein

1 records

Download Protein FASTA
XP_057800281.1
MMGWGLWVVGCCFVLIVRWVLRRVNGWCYERKLGERRYELPPGDLGWPFIGNMWSFLRAFKCSRPESFISSFVDRYGHGGMYKVHMFGNPSIIVTTAEACRKVLTDDEAFKPGWPSSTMNLIGKNSFVAISDEEHRWLRKLTAAPVNGHEVLSLYMKYIEDNVIVALERWAGMGKMEFLTELRKLTFRIIMYIFLSSESEQVMEVMEREYTMLNYGVRAMAINIPGFAYHSALKARKRLVAVLQSIVTARREWRTKNPVG...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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