Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002703`

染色体: Chr03 坐标: 42981223-42983855 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002703`
名称	SmilChr03G002703
描述	pentatricopeptide repeat-containing protein At2g33680
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	42981223 - 42983855 / `+`

ID 对照

NCBI Gene ID	`LOC131015882`
GeneID	`131015882`
locus_tag	`-`
NCBI Name	`LOC131015882`
原始查询	`LOC131015882`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g33680
产物	pentatricopeptide repeat-containing protein At2g33680
Arabidopsis	`AT2G33680` (AT2G33680) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817933] identity=53.6; qcov=0.971; evalue=0; confidence=high
Rice	`Os01g0374200` - identity=51.3; qcov=0.971; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131015882

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800335.1`
2	Nucleus	细胞核	0.00000	`XP_057800335.1`
3	Chromosome	染色体	0.00000	`XP_057800335.1`
4	Centromere	着丝粒	0.00000	`XP_057800335.1`
5	Chromatin	染色质	0.00000	`XP_057800335.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:42981783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B28,B46,B8,D3
`Chr3:42981912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B77,B85,B94,B99,C26
`Chr3:42982208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:42982214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,C58
`Chr3:42982307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,C58
`Chr3:42982335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr3:42982452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B56,B82,B96,C65
`Chr3:42982520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B80,C42
`Chr3:42982816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B24,C85
`Chr3:42982863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B13,B8
`Chr3:42983141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,D10
`Chr3:42983324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800335.1

713 aa

356

713

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR_3

PPR

E_motif

PF01535 PPR 52-74 aa PF01535 PPR 81-109 aa PF01535 PPR 154-182 aa PF01535 PPR 184-213 aa PF13041 PPR_2 284-331 aa PF01535 PPR 286-313 aa PF13812 PPR_3 385-431 aa PF13041 PPR_2 385-432 aa PF01535 PPR 387-417 aa PF13041 PPR_2 485-533 aa PF13812 PPR_3 486-533 aa PF01535 PPR 488-518 aa PF01535 PPR 523-550 aa PF20431 E_motif 603-665 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	52	74	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	81	109	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	154	182	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	184	213	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF13041`	PPR_2	Repeat	284	331	2.9e-66	220.1	PPR repeat family
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	286	313	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF13812`	PPR_3	Repeat	385	431	5.5e-18	65.5	Pentatricopeptide repeat domain
`XP_057800335.1`	Pfam	`PF13041`	PPR_2	Repeat	385	432	2.9e-66	220.1	PPR repeat family
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	387	417	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF13041`	PPR_2	Repeat	485	533	2.9e-66	220.1	PPR repeat family
`XP_057800335.1`	Pfam	`PF13812`	PPR_3	Repeat	486	533	5.5e-18	65.5	Pentatricopeptide repeat domain
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	488	518	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF01535`	PPR	Repeat	523	550	5.1e-69	224.5	PPR repeat
`XP_057800335.1`	Pfam	`PF20431`	E_motif	Repeat	603	665	6.2e-20	71.9	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944352.1
TAATTCATGGCTTTATTTGCCAAAACCCCCTTTTTTTTAAATAATGTTTCAAAATATTGTGGTGATAAAAACTGTATTCTCATCTCCTTAATTTTTTCAATTCAGCCAATATGATACGTGTATAGTGTATGTGTGTTGAACTTGAAAACGAAAGCCTGCGGGTCCCTTATGAACCATGTTGCTGCGTTGCCGCCGCAGTCGCGCCATCTCTTCGCCGGACTCCGCGCCTTCATCGACCAGAAAAACATCTCCAACGGAAA...

CDS

1 records

下载 CDS FASTA

LOC131015882
ATGAACCATGTTGCTGCGTTGCCGCCGCAGTCGCGCCATCTCTTCGCCGGACTCCGCGCCTTCATCGACCAGAAAAACATCTCCAACGGAAAATGCATCCACGCCCATCTCCTCAAAACTGGGATCCTCCCTGCATGCGCACCCTTCTCCATCAGCCTCCTCATCTTGTATGCCAAATGCAGCCTCTTCTCCGACGCCCGCCGCCTGTTCGACCAAATGCCGCTCAAGCATGATGCAGTTCCGTGGAACATCCTTATTAA...

Protein

1 records

下载 Protein FASTA

XP_057800335.1
MNHVAALPPQSRHLFAGLRAFIDQKNISNGKCIHAHLLKTGILPACAPFSISLLILYAKCSLFSDARRLFDQMPLKHDAVPWNILINGYSQSGHARYSFSALQLFKEMLHSSTLPESHTFAGVFSASAVLEDAVMAQQAHSFVVKLCDYCDVFVYSSMLNVYCKLGFLSDGRKVFDEMSERNSITWSTLISGYASQRLGSEAFEIFRAMVSGGEEEVNEFVLTSVLSAFTSPHYVNLGNQIHCLAVKNGCSQIASVGNAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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