当前解析结果
SmilChr03G002717| 统一新 Gene ID | SmilChr03G002717 |
|---|---|
| 名称 | SmilChr03G002717 |
| 描述 | uncharacterized SmilChr03G002717 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43118900 - 43121422 / + |
| NCBI Gene ID | LOC131015888 |
|---|---|
| GeneID | 131015888 |
| locus_tag | - |
| NCBI Name | LOC131015888 |
| 原始查询 | LOC131015888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0499600; species=rice; confidence=medium |
| 产物 | hit=Os09g0499600; species=rice; confidence=medium |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=43; qcov=0.705; evalue=9.52e-89; confidence=medium |
| Rice | Os09g0499600- identity=40.4; qcov=0.822; evalue=8.33e-92; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015888 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800348.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057800348.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057800348.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057800348.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057800348.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43119876 |
GCT |
G |
2bp_deletion | frameshift_variant | 8 | A13,B22,B54,B65,B70,C13,C30,C31 |
Chr3:43119883 |
A |
AG |
1bp_insertion | frameshift_variant | 7 | A13,B54,B70,C13,C30,C31,C74 |
Chr3:43119887 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | A13,B54,B70,C13,C30,C31,C74 |
Chr3:43119920 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | B70,C13,C31 |
Chr3:43119920 |
T |
TG |
1bp_insertion | CDS_variant | 3 | B70,C13,C31 |
Chr3:43119925 |
AAG |
A |
2bp_deletion | frameshift_variant | 1 | D11 |
Chr3:43119925 |
AAG |
A |
2bp_deletion | CDS_variant | 1 | D11 |
Chr3:43119927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C78 |
Chr3:43119935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B70,C13,C31 |
Chr3:43119944 |
TG |
T |
1bp_deletion | frameshift_variant | 16 | A10,B140,B2,B39,B42,B46,B90,B91,B92,C1,C24,C32,C42,C6,C68,C79 |
Chr3:43119975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B70,C13,C31 |
Chr3:43119990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800348.1PF04937
DUF659 25-77 aa
PF05699
Dimer_Tnp_hAT 300-363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800348.1 |
Pfam | PF04937 |
DUF659 | Domain | 25 | 77 | 1.6e-13 | 51.2 | Domain of unknown function (DUF659) |
XP_057800348.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 300 | 363 | 1.5e-10 | 41.4 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。