当前解析结果
SmilChr03G002706| 统一新 Gene ID | SmilChr03G002706 |
|---|---|
| 名称 | SmilChr03G002706 |
| 描述 | uncharacterized SmilChr03G002706 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43029575 - 43036064 / - |
| NCBI Gene ID | LOC131015894 |
|---|---|
| GeneID | 131015894 |
| locus_tag | - |
| NCBI Name | LOC131015894 |
| 原始查询 | LOC131015894 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0315200; species=rice; confidence=low |
| 产物 | hit=Os08g0315200; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os08g0315200- identity=31.6; qcov=0.527; evalue=3.06e-19; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015894 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800367.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057800367.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057800367.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800367.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800367.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43031973 |
A |
ACC |
2bp_insertion | frameshift_variant | 13 | B12,B40,B48,B49,B56,B60,B74,B96,C24,C29,C40,D1,D5 |
Chr3:43031979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B37,B79,C12,C64 |
Chr3:43031995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr3:43032034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:43032038 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B22,B44 |
Chr3:43032038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B44 |
Chr3:43032064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C74 |
Chr3:43032124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C60 |
Chr3:43032126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:43032129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr3:43032137 |
C |
CT |
1bp_insertion | frameshift_variant | 14 | A1,A21,A22,A23,B119,B12,B137,B19,B80,B84,C21,C23,C54,C84 |
Chr3:43032146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A3,B66,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800367.1PF19259
Ty3_capsid 23-211 aa
PF03732
PEG10_N-capsid 29-109 aa
PF00098
zf-CCHC 259-274 aa
XP_057800368.1PF19259
Ty3_capsid 23-211 aa
PF03732
PEG10_N-capsid 29-109 aa
PF00098
zf-CCHC 259-274 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800367.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 23 | 211 | 1.4e-07 | 31.9 | Ty3 transposon capsid-like protein |
XP_057800367.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 29 | 109 | 8.2e-12 | 46.0 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057800367.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 259 | 274 | 5.2e-07 | 30.2 | Zinc knuckle |
XP_057800368.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 23 | 211 | 1.4e-07 | 31.9 | Ty3 transposon capsid-like protein |
XP_057800368.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 29 | 109 | 7.9e-12 | 46.1 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057800368.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 259 | 274 | 5.1e-07 | 30.2 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。