当前解析结果
SmilChr03G002753| 统一新 Gene ID | SmilChr03G002753 |
|---|---|
| 名称 | SmilChr03G002753 |
| 描述 | beta-hexosaminidase 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43756395 - 43758734 / + |
| NCBI Gene ID | LOC131015928 |
|---|---|
| GeneID | 131015928 |
| locus_tag | - |
| NCBI Name | LOC131015928 |
| 原始查询 | LOC131015928 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-hexosaminidase 2-like |
| 产物 | beta-hexosaminidase 2-like |
| Arabidopsis | AT1G05590 (HEXO2)beta-hexosaminidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837064] identity=64.2; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0575500- identity=59.2; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0004563 (beta-N-acetylhexosaminidase activity); GO:0005975 (carbohydrate metabolic process); GO:0016020 (membrane); GO:0030203 (glycosaminoglycan metabolic process) |
| KEGG | smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil00604 (Glycosphingolipid biosynthesis - ganglio series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00728 (Glyco_hydro_20); PF14845 (Glycohydro_20b2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015928 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057800426.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057800426.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800426.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800426.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43756706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr3:43756783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,B50 |
Chr3:43756854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B2,B83,C40,C59 |
Chr3:43756884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr3:43757688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B56,B82,C65 |
Chr3:43757724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B13 |
Chr3:43757794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,B66 |
Chr3:43757895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C21,C31 |
Chr3:43758010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B58,C21,C31 |
Chr3:43758066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B31,C71 |
Chr3:43758075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B50,B60 |
Chr3:43758165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800426.1PF14845
Glycohydro_20b2 32-148 aa
PF00728
Glyco_hydro_20 168-525 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800426.1 |
Pfam | PF14845 |
Glycohydro_20b2 | Domain | 32 | 148 | 2.5e-21 | 77.5 | beta-acetyl hexosaminidase like |
XP_057800426.1 |
Pfam | PF00728 |
Glyco_hydro_20 | Domain | 168 | 525 | 1.5e-102 | 344.3 | Glycosyl hydrolase family 20, catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。