Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002810`

染色体: Chr03 坐标: 44561587-44563867 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002810`
名称	SmilChr03G002810
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	44561587 - 44563867 / `+`

ID 对照

NCBI Gene ID	`LOC131015979`
GeneID	`131015979`
locus_tag	`-`
NCBI Name	`LOC131015979`
原始查询	`LOC131015979`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like
产物	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B%2C chloroplastic-like
Arabidopsis	`AT3G48870` (HSP93-III) Clp ATPase [Source:NCBI gene (formerly Entrezgene);Acc:824048] identity=49.4; qcov=1.13; evalue=0; confidence=high
Rice	`Os04g0397100` (ClpC1) - identity=55.2; qcov=0.583; evalue=1.31e-127; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat)
KEGG	-
Pfam	PF00004 (AAA); PF00158 (Sigma54_activat); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF13191 (AAA_16); PF17871 (AAA_lid_9); PF23569 (NBD_SMAX1)
InterPro	-
eggNOG	-
NR	GeneID:131015979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800491.1`
2	Cytosol	细胞质基质	1.00000	`XP_057800491.1`
3	Nucleus	细胞核	0.40000	`XP_057800491.1`
4	Nucleoplasm	核质	0.40000	`XP_057800491.1`
5	Chromosome	染色体	0.00000	`XP_057800491.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:44561814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C55,D8
`Chr3:44561863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C46
`Chr3:44561974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B48
`Chr3:44561992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B85,D1
`Chr3:44561994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B96,D7
`Chr3:44562006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B96,D7
`Chr3:44562310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C55,D8
`Chr3:44562403`	`CG`	`C`	1bp_deletion	frameshift_variant	9	A22,B140,B65,B74,C18,C2,C66,C79,C8
`Chr3:44562589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr3:44562697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C13
`Chr3:44562799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,C47
`Chr3:44562940`	`CA`	`C`	1bp_deletion	frameshift_variant	2	B97,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800491.1

581 aa

290

581

AAA_16

NBD_SMAX1

AAA

AAA_lid_9

AAA_2

Sigma54_activat

AAA_5

AAA

ClpB_D2-small

PF13191 AAA_16 33-79 aa PF23569 NBD_SMAX1 37-139 aa PF00004 AAA 56-169 aa PF17871 AAA_lid_9 198-271 aa PF07724 AAA_2 329-480 aa PF00158 Sigma54_activat 331-481 aa PF07728 AAA_5 333-459 aa PF00004 AAA 334-451 aa PF10431 ClpB_D2-small 487-566 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800491.1`	Pfam	`PF13191`	AAA_16	Domain	33	79	2.6e-15	58.1	AAA ATPase domain
`XP_057800491.1`	Pfam	`PF23569`	NBD_SMAX1	Domain	37	139	7.7e-08	33.1	SMAX1 nucleotide binding domain
`XP_057800491.1`	Pfam	`PF00004`	AAA	Domain	56	169	3.1e-25	89.9	ATPase family associated with various cellular activities (AAA)
`XP_057800491.1`	Pfam	`PF17871`	AAA_lid_9	Domain	198	271	3.4e-22	79.0	AAA lid domain
`XP_057800491.1`	Pfam	`PF07724`	AAA_2	Domain	329	480	1.3e-61	208.2	AAA domain (Cdc48 subfamily)
`XP_057800491.1`	Pfam	`PF00158`	Sigma54_activat	Domain	331	481	2.9e-08	34.3	Sigma-54 interaction domain
`XP_057800491.1`	Pfam	`PF07728`	AAA_5	Domain	333	459	7.8e-18	65.5	AAA domain (dynein-related subfamily)
`XP_057800491.1`	Pfam	`PF00004`	AAA	Domain	334	451	3.1e-25	89.9	ATPase family associated with various cellular activities (AAA)
`XP_057800491.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	487	566	1e-18	67.8	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944508.1
GCAAGGATGCCAACAGATTATGTGTTTGTGTGCGTGTTTTAATTTTGTGAAAAAGCATAACGTATATTTCGTTTGCAGTTGTTGATGATTTAATGACATAAAAATTATGATTATGTATTCTGTGGTATAAATAGTGGAGTAATAATTTGAGATGGCAAGGATTTCAATTTGATCAGTTGTAAAACAAAGGATTAATTATGGAGAAATTAGAGCAGTGTAATTTCAAAGCTGATACGCTGCTGAAATATGGAACAGACATG...

CDS

1 records

下载 CDS FASTA

LOC131015979
ATGGAGAAATTAGAGCAGTGTAATTTCAAAGCTGATACGCTGCTGAAATATGGAACAGACATGACCGATCTGGCCAAGACGGGGAAGCTTGATCCGGTGATCGGAAGGGAGGAGGAGCTGCAGCGGCTGACCCAAGTTTTGTTGAAGAGGCGGAAGAACAATGCTTGTCTTGTTGGTGATCCCGGCGTCGGCAAAACTGTTATAGTCGAAGCTCTTGCTGCCAAAATTGCATCCGCTCAAGTTCCTCACAAACTCACCCA...

Protein

1 records

下载 Protein FASTA

XP_057800491.1
MEKLEQCNFKADTLLKYGTDMTDLAKTGKLDPVIGREEELQRLTQVLLKRRKNNACLVGDPGVGKTVIVEALAAKIASAQVPHKLTQKKVFSIDIGRLIGGSSNRGEFEERLINLVDEVRRSEGSVIIFIDELHTLIGAGATSGNALDAANILKPALARGDLKCIGATTVEEYRKYIEKDGALKRRFQAIEVAEPPRDDALGILEGLIHKYQTHHGVHYTPTALISAVDLSKQYVTELVLPDKAIDLIDEAGARAQMLGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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