当前解析结果
SmilChr03G002816| 统一新 Gene ID | SmilChr03G002816 |
|---|---|
| 名称 | SmilChr03G002816 |
| 描述 | protein AUXIN SIGNALING F-BOX 2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44645918 - 44650101 / + |
| NCBI Gene ID | LOC131015980 |
|---|---|
| GeneID | 131015980 |
| locus_tag | - |
| NCBI Name | LOC131015980 |
| 原始查询 | LOC131015980 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein AUXIN SIGNALING F-BOX 2 |
| 产物 | protein AUXIN SIGNALING F-BOX 2 |
| Arabidopsis | AT1G12820 (AFB3)auxin signaling F-box 3 [Source:NCBI gene (formerly Entrezgene);Acc:837838] identity=74.6; qcov=0.991; evalue=0; confidence=high |
| Rice | Os04g0395600 (OsAFB2)- identity=68.1; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6); PF18511 (F-box_5); PF18791 (Transp_inhibit) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015980 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057800492.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057800492.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057800492.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800492.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800492.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44647108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B130,C13 |
Chr3:44647165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:44647393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr3:44648923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:44648958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:44649343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr3:44649444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C46 |
Chr3:44649573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:44649786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C46 |
Chr3:44649792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C55,D6,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800492.1PF00646
F-box 11-42 aa
PF18511
F-box_5 11-48 aa
PF12937
F-box-like 12-42 aa
PF18791
Transp_inhibit 68-114 aa
PF13516
LRR_6 156-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800492.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 42 | 9.3e-05 | 22.9 | F-box domain |
XP_057800492.1 |
Pfam | PF18511 |
F-box_5 | Domain | 11 | 48 | 6.9e-19 | 67.8 | F-box |
XP_057800492.1 |
Pfam | PF12937 |
F-box-like | Domain | 12 | 42 | 1.1e-08 | 35.4 | F-box-like |
XP_057800492.1 |
Pfam | PF18791 |
Transp_inhibit | Repeat | 68 | 114 | 2e-25 | 88.8 | Transport inhibitor response 1 protein domain |
XP_057800492.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 156 | 172 | 5.1e-06 | 26.8 | Leucine Rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。