Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002839`

染色体: Chr03 坐标: 44946068-44947905 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002839`
名称	SmilChr03G002839
描述	double-stranded RNA-binding protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	44946068 - 44947905 / `-`

ID 对照

NCBI Gene ID	`LOC131015996`
GeneID	`131015996`
locus_tag	`-`
NCBI Name	`LOC131015996`
原始查询	`LOC131015996`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	double-stranded RNA-binding protein 3
产物	double-stranded RNA-binding protein 3
Arabidopsis	`AT3G26932` (DRB3) dsRNA-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:822310] identity=47.7; qcov=0.989; evalue=8.07e-100; confidence=high
Rice	`Os09g0508500` (OsDRB3) - identity=82.9; qcov=0.426; evalue=2.23e-90; confidence=low
GO	GO:0003725 (double-stranded RNA binding)
KEGG	-
Pfam	PF00035 (dsrm)
InterPro	-
eggNOG	-
NR	GeneID:131015996

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800522.1`
2	Cytoplasm	细胞质	0.40000	`XP_057800522.1`
3	Cytosol	细胞质基质	0.20000	`XP_057800522.1`
4	Chromosome	染色体	0.00000	`XP_057800522.1`
5	Centromere	着丝粒	0.00000	`XP_057800522.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:44946178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B73,B91,B98,C16
`Chr3:44946192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:44946222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:44946251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:44946302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:44946525`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B88
`Chr3:44946525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr3:44946536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A18,B133,B90,B92
`Chr3:44947025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:44947240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:44947302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B25,C9,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800522.1

371 aa

186

371

dsrm

PF00035 dsrm 3-68 aa PF00035 dsrm 88-152 aa

XP_057800523.1

371 aa

186

371

dsrm

PF00035 dsrm 3-68 aa PF00035 dsrm 88-152 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800522.1`	Pfam	`PF00035`	dsrm	Domain	3	68	1.3e-34	119.3	Double-stranded RNA binding motif
`XP_057800522.1`	Pfam	`PF00035`	dsrm	Domain	88	152	1.3e-34	119.3	Double-stranded RNA binding motif
`XP_057800523.1`	Pfam	`PF00035`	dsrm	Domain	3	68	1.3e-34	119.3	Double-stranded RNA binding motif
`XP_057800523.1`	Pfam	`PF00035`	dsrm	Domain	88	152	1.3e-34	119.3	Double-stranded RNA binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944540.1
ATGTCTTATCAAAAAAATAAATACCAAAAAATGGTTTGGTTACGGTCAACGAAATACAATAGAATTCAAAATCGTAATAAATATTTTTGAAAGGCATAAAATCCATCCTCCAAAAAGGTAAAAAGCAAACACCTTTTCGTTTACCAAGAAGGCAAAAAAGAAAAAGTGAAAATAACCGCGCCTTAACAACAAACTGCTCTGGTAATATTTAGGCACTGAAGTTTTCTCAAACCGAACATTTCCAAATCAGCACACAATTG...

XM_057944539.1
GTCTTATCAAAAAAATAAATACCAAAAAATGGTTTGGTTACGGTCAACGAAATACAATAGAATTCAAAATCGTAATAAATATTTTTGAAAGGCATAAAATCCATCCTCCAAAAAGGTAAAAAGCAAACACCTTTTCGTTTACCAAGAAGGCAAAAAAGAAAAAGTGAAAATAACCGCGCCTTAACAACAAACTGCTCTGGTAATATTTAGGCACTGAAGTTTTCTCAAACCGAACATTTCCAAATCAGCACACAATTGCC...

CDS

2 records

下载 CDS FASTA

LOC131015996
ATGTTCAAGAATCAGCTGCAAGAATTAGCTCAAAGAAGCTGCTTCAATCTACCGTCGTATGCGTGCGTGAGAGAAGGGCCCGATCACGCCCCGAGATTCAAAGCCTCGGTGAATTTCAACGGCGAGGTTTTCGAGAGCCCCACTTACTCCACCACGTTGCGGCAGGCGGAGCACGCGGCCGCAGAGGCGGCGCTCAACTCCCTCTCCGCGAGAGGGCCGTCGAAATCGCTGACAGCCAGAATTCTCGATGAGACGGGAGT...

Protein

2 records

下载 Protein FASTA

XP_057800522.1
MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEVFESPTYSTTLRQAEHAAAEAALNSLSARGPSKSLTARILDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFTSTVELAGMTFSGDAAKTKKQAEKNAAIAAWSALKQMPNLGPLSEQENVGGGKCWNAGRVIRRRDPHQHQQAGRGRMQRPFPQKRPWKFPDPFLDPTPALDTHKHNANTNTNSFLSLLPPPPPRTASKILPPNWPTSNVFL...

XP_057800523.1
MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEVFESPTYSTTLRQAEHAAAEAALNSLSARGPSKSLTARILDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFTSTVELAGMTFSGDAAKTKKQAEKNAAIAAWSALKQMPNLGPLSEQENVGGGKCWNAGRVIRRRDPHQHQQAGRGRMQRPFPQKRPWKFPDPFLDPTPALDTHKHNANTNTNSFLSLLPPPPPRTASKILPPNWPTSNVFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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