Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002843`

染色体: Chr03 坐标: 44971882-44973705 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002843`
名称	SmilChr03G002843
描述	vacuolar protein sorting-associated protein 28 homolog 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	44971882 - 44973705 / `-`

ID 对照

NCBI Gene ID	`LOC131016011`
GeneID	`131016011`
locus_tag	`-`
NCBI Name	`LOC131016011`
原始查询	`LOC131016011`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 28 homolog 2-like
产物	vacuolar protein sorting-associated protein 28 homolog 2-like
Arabidopsis	`AT4G05000` (VPS28-2) Vacuolar protein sorting-associated protein VPS28 family protein [Source:NCBI gene (formerly Entrezgene);Acc:825842] identity=85.6; qcov=0.995; evalue=3.8e-137; confidence=high
Rice	`Os01g0781000` - identity=64.8; qcov=1.02; evalue=1.08e-95; confidence=high
GO	GO:0000813 (ESCRT I complex); GO:0043328 (protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway); GO:0044877 (protein-containing complex binding)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03997 (VPS28)
InterPro	-
eggNOG	-
NR	GeneID:131016011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057800545.1`
2	Cytoplasm	细胞质	0.60000	`XP_057800545.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057800545.1`
4	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057800545.1`
5	Clathrin-coated vesicle	Clathrin-coated vesicle	0.40000	`XP_057800545.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:44972151`	`TG`	`T`	1bp_deletion	frameshift_variant	2	B66,C74
`Chr3:44972151`	`TG`	`T`	1bp_deletion	CDS_variant	2	B66,C74
`Chr3:44972162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:44972262`	`C`	`T`	EMS_canonical_SNV	stop_gained	25	A11,A8,B10,B110,B114,B128,B136,B138,B14,B140,B25,B28,B38,B41,C12,C17,C18,C29,C30,C44,C49,C59,C72,C77,C9
`Chr3:44972288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,C77
`Chr3:44972294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B102,B75,C25,C8
`Chr3:44972312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:44972346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B92,C26,C47,C6,C75
`Chr3:44972418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C6,C75
`Chr3:44972422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B23,B43,B95,C77
`Chr3:44972454`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B134,C30
`Chr3:44972454`	`C`	`CA`	1bp_insertion	CDS_variant	2	B134,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800545.1

209 aa

104

209

VPS28

PF03997 VPS28 18-204 aa

XP_057800546.1

209 aa

104

209

VPS28

PF03997 VPS28 18-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800545.1`	Pfam	`PF03997`	VPS28	Family	18	204	9.8e-73	244.7	VPS28 protein
`XP_057800546.1`	Pfam	`PF03997`	VPS28	Family	18	204	9.8e-73	244.7	VPS28 protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944562.1
AAAATAGTCTGACCCAAGAAAAGAAAAAGCGTACTCCAGAAAATTGAGATAATAATCCGATATGGAGTTTAATTGCTTTGTTAAGAGAGTTTAATTGCTACCAATTTTATTTTTGTTGTTTCGTCCGATTTATGAATAATGATGTCTCGACAAGTTGTCGAAGAAAAAAGAGGAAGCAAAAGAATGGAGGGGAACAGACGACTATGAATAATTTATTCTGAAATAATAGTTTTTTGATTAAACCCCACACGCAATCTCAG...

XM_057944563.1
TTCGTCCGATTTATGAATAATGATGTCTCGACAAGTTGTCGAAGAAAAAAGAGGAAGCAAAAGAATGGAGGGGAACAGACGACTATGAATAATTTATTCTGAAATAATAGTTTTTTGATTAAACCCCACACGCAATCTCAGACTGGCAGACAACCTGCTCTCCTCCCCTCTGCAACACTCTTCCCATAATTCAAAGCGCGTCTTCTTTCTCTGTAAGGTCTTCTATCTCTCTCTAGAGATATTCTCCCCCTTGTTAACTT...

CDS

2 records

下载 CDS FASTA

LOC131016011
ATGGAGGTTAAGCTATGGAACGACAAGCGCGAAAGGGAGATGTATGACAATTTCGCCGAGCTCTTTGCAATTATAAAGGCAACAGAGAAGCTTGAGAAAGCTTATGTGCGGGACGTAATATCTCCTGCCGAGTATGAAATTGAATGCCAAAAGCTGATTGCCCATTTCAAAACGCTGTCTTCCACGTTGAAAGACATTGTACCTAGCATTGAGAGGTTCCATGATACTTACAAGATGGATTGTCCTGCAGCCATAAACCG...

Protein

2 records

下载 Protein FASTA

XP_057800545.1
MEVKLWNDKREREMYDNFAELFAIIKATEKLEKAYVRDVISPAEYEIECQKLIAHFKTLSSTLKDIVPSIERFHDTYKMDCPAAINRLVTSGVPATVEHRAAAATSNTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMRDWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPTTGT

XP_057800546.1
MEVKLWNDKREREMYDNFAELFAIIKATEKLEKAYVRDVISPAEYEIECQKLIAHFKTLSSTLKDIVPSIERFHDTYKMDCPAAINRLVTSGVPATVEHRAAAATSNTTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMRDWIARLSKMGAADELTEQQARQLHFDLESSYNSFMAALPTTGT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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