当前解析结果
SmilChr03G002892| 统一新 Gene ID | SmilChr03G002892 |
|---|---|
| 名称 | SmilChr03G002892 |
| 描述 | probable phytol kinase 2, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 45607948 - 45610801 / - |
| NCBI Gene ID | LOC131016051 |
|---|---|
| GeneID | 131016051 |
| locus_tag | - |
| NCBI Name | LOC131016051 |
| 原始查询 | LOC131016051 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phytol kinase 2, chloroplastic |
| 产物 | probable phytol kinase 2%2C chloroplastic |
| Arabidopsis | AT5G58560 (FOLK)Phosphatidate cytidylyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835969] identity=55.4; qcov=0.777; evalue=1.47e-51; confidence=high |
| Rice | Os01g0832000 (CDS5)- identity=59.2; qcov=0.726; evalue=4.26e-53; confidence=high |
| GO | GO:0016301 (kinase activity) |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016051 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057800582.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057800582.1 |
| 3 | Chloroplast | 叶绿体 | 0.60000 | XP_057800584.1 |
| 4 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057800584.1 |
| 5 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057800584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:45608127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr3:45608228 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr3:45608228 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B35 |
Chr3:45608239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:45608415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:45608440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,D10 |
Chr3:45608470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B102,B50,C33,C42 |
Chr3:45608685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B73,C32,C60,C68 |
Chr3:45609611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:45609618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:45610526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B75,C33,D11,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。