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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002961

染色体: Chr03 坐标: 46368533-46374019 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002961
名称SmilChr03G002961
描述pentatricopeptide repeat-containing protein At3g18110, chloroplastic
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46368533 - 46374019 / +

ID 对照

NCBI Gene IDLOC131016060
GeneID131016060
locus_tag-
NCBI NameLOC131016060
原始查询LOC131016060

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g18110, chloroplastic
产物pentatricopeptide repeat-containing protein At3g18110%2C chloroplastic
ArabidopsisAT3G18110 (EMB1270)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821336]
identity=61.7; qcov=0.989; evalue=0; confidence=high
RiceOs06g0199100
-
identity=54.7; qcov=0.837; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131016060

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057800598.1
2 Chloroplast stroma 叶绿体基质 0.40000 XP_057800598.1
3 Nucleus 细胞核 0.00000 XP_057800598.1
4 Chromosome 染色体 0.00000 XP_057800598.1
5 Centromere 着丝粒 0.00000 XP_057800598.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46368682 C T EMS_canonical_SNV CDS_variant 1 B33
Chr3:46368752 TCA T 2bp_deletion frameshift_variant 1 C24
Chr3:46368752 TCA T 2bp_deletion CDS_variant 1 C24
Chr3:46368871 G A EMS_canonical_SNV CDS_variant 5 B114,B38,B39,C38,D11
Chr3:46368922 G A EMS_canonical_SNV CDS_variant 1 D10
Chr3:46368997 G A EMS_canonical_SNV CDS_variant 5 A14,B127,B16,B50,C33
Chr3:46369015 G A EMS_canonical_SNV CDS_variant 5 A16,B101,B115,B78,B8
Chr3:46369137 C T EMS_canonical_SNV CDS_variant 3 B114,B38,B39
Chr3:46369303 G A EMS_canonical_SNV CDS_variant 1 B37
Chr3:46369319 G A EMS_canonical_SNV CDS_variant 1 C47
Chr3:46369468 C T EMS_canonical_SNV CDS_variant 2 B140,C37
Chr3:46369564 G A EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800598.1
1459 aa
N
1
730
1459
TPR_24
PPR_2
PPR_3
PPR
PPR_3
PPR_1
PPR_long
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR
PPR_2
PPR
TPR_24
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_long
PPR
PPR
PPR_3
PPR_3
TPR_24
PPR
PPR_long
PPR_3
PPR_2
PPR_long
PPR_2
PPR
PPR
PPR_3
PPR
PPR
TPR_24
PPR
C
PF23276 TPR_24 202-330 aa PF13041 PPR_2 232-276 aa PF13812 PPR_3 232-276 aa PF01535 PPR 234-263 aa PF13812 PPR_3 291-350 aa PF12854 PPR_1 299-331 aa PF17177 PPR_long 300-425 aa PF13041 PPR_2 302-347 aa PF01535 PPR 305-335 aa PF12854 PPR_1 334-364 aa PF01535 PPR 341-369 aa PF13041 PPR_2 341-386 aa PF13812 PPR_3 360-421 aa PF01535 PPR 375-405 aa PF13041 PPR_2 408-455 aa PF01535 PPR 411-439 aa PF23276 TPR_24 414-540 aa PF17177 PPR_long 426-525 aa PF13812 PPR_3 433-486 aa PF12854 PPR_1 439-470 aa PF01535 PPR 445-474 aa PF13041 PPR_2 445-491 aa PF13812 PPR_3 466-523 aa PF12854 PPR_1 474-505 aa PF13041 PPR_2 477-523 aa PF01535 PPR 481-510 aa PF01535 PPR 517-544 aa PF13812 PPR_3 536-577 aa PF17177 PPR_long 687-870 aa PF01535 PPR 759-786 aa PF01535 PPR 794-822 aa PF13812 PPR_3 795-837 aa PF13812 PPR_3 849-907 aa PF23276 TPR_24 849-958 aa PF01535 PPR 868-892 aa PF17177 PPR_long 878-974 aa PF13812 PPR_3 920-977 aa PF13041 PPR_2 930-979 aa PF17177 PPR_long 950-1078 aa PF13041 PPR_2 965-1014 aa PF01535 PPR 969-998 aa PF01535 PPR 1004-1032 aa PF13812 PPR_3 1029-1083 aa PF01535 PPR 1040-1068 aa PF01535 PPR 1076-1099 aa PF23276 TPR_24 1083-1142 aa PF01535 PPR 1109-1138 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800598.1 Pfam PF23276 TPR_24 Repeat 202 330 1e-47 162.1 Pentatricopeptide repeat-containing protein
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 232 276 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 232 276 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF01535 PPR Repeat 234 263 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 291 350 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF12854 PPR_1 Repeat 299 331 4.1e-80 263.9 PPR repeat
XP_057800598.1 Pfam PF17177 PPR_long Repeat 300 425 5.7e-46 157.3 Pentacotripeptide-repeat region of PRORP
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 302 347 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF01535 PPR Repeat 305 335 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF12854 PPR_1 Repeat 334 364 4.1e-80 263.9 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 341 369 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 341 386 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 360 421 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF01535 PPR Repeat 375 405 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 408 455 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF01535 PPR Repeat 411 439 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF23276 TPR_24 Repeat 414 540 1e-47 162.1 Pentatricopeptide repeat-containing protein
XP_057800598.1 Pfam PF17177 PPR_long Repeat 426 525 5.7e-46 157.3 Pentacotripeptide-repeat region of PRORP
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 433 486 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF12854 PPR_1 Repeat 439 470 4.1e-80 263.9 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 445 474 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 445 491 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 466 523 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF12854 PPR_1 Repeat 474 505 4.1e-80 263.9 PPR repeat
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 477 523 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF01535 PPR Repeat 481 510 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 517 544 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 536 577 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF17177 PPR_long Repeat 687 870 5.7e-46 157.3 Pentacotripeptide-repeat region of PRORP
XP_057800598.1 Pfam PF01535 PPR Repeat 759 786 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 794 822 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 795 837 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 849 907 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF23276 TPR_24 Repeat 849 958 1e-47 162.1 Pentatricopeptide repeat-containing protein
XP_057800598.1 Pfam PF01535 PPR Repeat 868 892 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF17177 PPR_long Repeat 878 974 5.7e-46 157.3 Pentacotripeptide-repeat region of PRORP
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 920 977 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 930 979 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF17177 PPR_long Repeat 950 1078 5.7e-46 157.3 Pentacotripeptide-repeat region of PRORP
XP_057800598.1 Pfam PF13041 PPR_2 Repeat 965 1014 1.7e-122 400.1 PPR repeat family
XP_057800598.1 Pfam PF01535 PPR Repeat 969 998 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 1004 1032 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF13812 PPR_3 Repeat 1029 1083 6.9e-92 302.2 Pentatricopeptide repeat domain
XP_057800598.1 Pfam PF01535 PPR Repeat 1040 1068 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF01535 PPR Repeat 1076 1099 2.8e-99 319.4 PPR repeat
XP_057800598.1 Pfam PF23276 TPR_24 Repeat 1083 1142 1e-47 162.1 Pentatricopeptide repeat-containing protein
XP_057800598.1 Pfam PF01535 PPR Repeat 1109 1138 2.8e-99 319.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057944615.1
CCGAATGCGGTGAAATTGACTCCACAAAAATGGTAGAATGCAATCTTCTACTGCATTCTTGCCAGTATATGGCTTCACTCCCACAACTGCACATGTGAATCAAAGAAAGATCCCATGTTAAACATGGCATGCACCGGAGTTCTGGGATTCACTACGCCGCCGTTGAATTCGAGCAGAAAATCAAAGCAGCAAAGAAAGGACACTTCTTTCTCTTGTTGCTCAACTTCCACTTCCACAAACGAGCATGAAACCGCGACAAA...

CDS

1 records

下载 CDS FASTA
LOC131016060
ATGTTAAACATGGCATGCACCGGAGTTCTGGGATTCACTACGCCGCCGTTGAATTCGAGCAGAAAATCAAAGCAGCAAAGAAAGGACACTTCTTTCTCTTGTTGCTCAACTTCCACTTCCACAAACGAGCATGAAACCGCGACAAAATTCACGTATTCCAGAGCTTCACCGTCTGTGAGGTGGCCGCACTTGAAATTCACCGAGACCGAGCAGAGACCGCTGATGAAAACACCGGTTCCTGACGTTAGAGATGAAATCGG...

Protein

1 records

下载 Protein FASTA
XP_057800598.1
MLNMACTGVLGFTTPPLNSSRKSKQQRKDTSFSCCSTSTSTNEHETATKFTYSRASPSVRWPHLKFTETEQRPLMKTPVPDVRDEIGVDGGEGFVGAEAEDEADKVFDKRPSRNRVKKMNKLALKRAKDWRKRVQFLTDRILELKSDEFVADVLDEKLVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYAPNARMLATILSVLGKANQEALAVEMYTRAESAVGNTVQVYNAMMGVYARNGRFTKVKELLDLMRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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