Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002942`

染色体: Chr03 坐标: 46132367-46137049 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002942`
名称	SmilChr03G002942
描述	cellulose synthase-like protein D3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46132367 - 46137049 / `+`

ID 对照

NCBI Gene ID	`LOC131016063`
GeneID	`131016063`
locus_tag	`-`
NCBI Name	`LOC131016063`
原始查询	`LOC131016063`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cellulose synthase-like protein D3
产物	cellulose synthase-like protein D3
Arabidopsis	`AT3G03050` (CSLD3) cellulose synthase-like D3 [Source:NCBI gene (formerly Entrezgene);Acc:821148] identity=80.6; qcov=1; evalue=0; confidence=high
Rice	`Os06g0111800` (OsCSLD2) - identity=79.1; qcov=1.02; evalue=0; confidence=high
GO	GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity)
KEGG	-
Pfam	PF03552 (Cellulose_synt); PF14570 (zf-RING_4)
InterPro	-
eggNOG	-
NR	GeneID:131016063

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057800600.1`
2	Vacuole	液泡	0.20000	`XP_057800600.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057800600.1`
4	Nucleus	细胞核	0.00000	`XP_057800600.1`
5	Chromosome	染色体	0.00000	`XP_057800600.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46133396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B33,C87
`Chr3:46133399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:46133439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:46133457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:46133501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:46133531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:46133772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B64,C24
`Chr3:46133983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B6,C34
`Chr3:46134050`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B64,C24
`Chr3:46134174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr3:46134286`	`CT`	`C`	1bp_deletion	frameshift_variant	1	D7
`Chr3:46134286`	`CT`	`C`	1bp_deletion	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800600.1

1147 aa

574

1147

zf-RING_4

Cellulose_synt

PF14570 zf-RING_4 132-181 aa PF03552 Cellulose_synt 377-1135 aa

XP_057800601.1

1147 aa

574

1147

zf-RING_4

Cellulose_synt

PF14570 zf-RING_4 132-181 aa PF03552 Cellulose_synt 377-1135 aa

XP_057800603.1

1147 aa

574

1147

zf-RING_4

Cellulose_synt

PF14570 zf-RING_4 132-181 aa PF03552 Cellulose_synt 377-1135 aa

XP_057800604.1

1147 aa

574

1147

zf-RING_4

Cellulose_synt

PF14570 zf-RING_4 132-181 aa PF03552 Cellulose_synt 377-1135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800600.1`	Pfam	`PF14570`	zf-RING_4	Domain	132	181	9.2e-18	64.5	RING/Ubox like zinc-binding domain
`XP_057800600.1`	Pfam	`PF03552`	Cellulose_synt	Domain	377	1135	0	1254.8	Cellulose synthase
`XP_057800601.1`	Pfam	`PF14570`	zf-RING_4	Domain	132	181	9.2e-18	64.5	RING/Ubox like zinc-binding domain
`XP_057800601.1`	Pfam	`PF03552`	Cellulose_synt	Domain	377	1135	0	1254.8	Cellulose synthase
`XP_057800603.1`	Pfam	`PF14570`	zf-RING_4	Domain	132	181	9.2e-18	64.5	RING/Ubox like zinc-binding domain
`XP_057800603.1`	Pfam	`PF03552`	Cellulose_synt	Domain	377	1135	0	1254.8	Cellulose synthase
`XP_057800604.1`	Pfam	`PF14570`	zf-RING_4	Domain	132	181	9.2e-18	64.5	RING/Ubox like zinc-binding domain
`XP_057800604.1`	Pfam	`PF03552`	Cellulose_synt	Domain	377	1135	0	1254.8	Cellulose synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057944617.1
TCATGTTCAGAGCTGCGTGCCGCCTCTCTTATATAAACTCACTAGGAGAGAGAGAGAGAGAGAGAGATAGAGTTTACGCACATTAGGCGATCGAAGATTGAAACTGTAGATTAATAATGCTCTCTCTCAAGGGCAACATGCTTCTGTAATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTTTAAGCCAAGTGGAGAGTGCCGGCGAGCATTACTGAATACATACACAAATTGTCTTCACCTCTTTGTAGGATCTAA...

XM_057944618.1
TTACGCACATTAGGCGATCGAAGATTGAAACTGTAGATTAATAATGCTCTCTCTCAAGGGCAACATGCTTCTGTAATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTTTAAGCCAAGTGGAGAGTGCCGGCGAGCATTACTGAATACATACACAAATTGTCTTCACCTCTTTGTAGGTATAACTTCCGCCCACCATTTTTACTTTTATTATATATCCGTTTTGCATAGTGAATCTTATGGTTGCACTTGCATCTCA...

CDS

4 records

下载 CDS FASTA

LOC131016063
ATGGCGTCTAAATCGTTTAAGGCGAGTAGATCAAATTTATCCACAGATTCTGAGATGATGGAGTCTCAGAATGGGAGGCCGCCGCTGCCTCCGCCATCTCACGTCACATTTGCTCGTCGGACCTCATCAGGCCGCTATGTCAGCTACTCTAGGGATGATCTCGACAGCGAGCTAGGCAATGGCGACTTTCTGGACTACACGGTCCACATCCCCCTCACCCCCGACAACCAGCCTAGTAACCCCGTCACACAGAAGGTCGA...

Protein

4 records

下载 Protein FASTA

XP_057800600.1
MASKSFKASRSNLSTDSEMMESQNGRPPLPPPSHVTFARRTSSGRYVSYSRDDLDSELGNGDFLDYTVHIPLTPDNQPSNPVTQKVEEQYVSSSLFTGGFNSMTRAHLMDKVIDSDASHPQMAGAKGSSCSVAGCDGKVMSDERGNDILPCECDFKICRDCYIDVLKTGDGICPGCKEQYNAADLDEERENWPSLPQLPPPPSGMSKVERRLSLMKSTKSMLMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGYDDGK...

XP_057800601.1
MASKSFKASRSNLSTDSEMMESQNGRPPLPPPSHVTFARRTSSGRYVSYSRDDLDSELGNGDFLDYTVHIPLTPDNQPSNPVTQKVEEQYVSSSLFTGGFNSMTRAHLMDKVIDSDASHPQMAGAKGSSCSVAGCDGKVMSDERGNDILPCECDFKICRDCYIDVLKTGDGICPGCKEQYNAADLDEERENWPSLPQLPPPPSGMSKVERRLSLMKSTKSMLMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGYDDGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器