Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002932`

染色体: Chr03 坐标: 46062193-46064517 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002932`
名称	SmilChr03G002932
描述	pentatricopeptide repeat-containing protein At2g29760, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46062193 - 46064517 / `-`

ID 对照

NCBI Gene ID	`LOC131016075`
GeneID	`131016075`
locus_tag	`-`
NCBI Name	`LOC131016075`
原始查询	`LOC131016075`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g29760, chloroplastic
产物	pentatricopeptide repeat-containing protein At2g29760%2C chloroplastic
Arabidopsis	`AT2G29760` (OTP81) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817526] identity=56.1; qcov=1; evalue=0; confidence=high
Rice	`Os02g0191200` - identity=37; qcov=1.01; evalue=1.22e-163; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131016075

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800632.1`
2	Nucleus	细胞核	0.00000	`XP_057800632.1`
3	Chromosome	染色体	0.00000	`XP_057800632.1`
4	Centromere	着丝粒	0.00000	`XP_057800632.1`
5	Chromatin	染色质	0.00000	`XP_057800632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46062448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,C20
`Chr3:46062452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:46062609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:46062780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C48
`Chr3:46062792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B6,C16,C34,C39
`Chr3:46062829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C48
`Chr3:46062854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr3:46062876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:46062882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B130
`Chr3:46062899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,C11,C63,C69
`Chr3:46062919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:46062943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800632.1

729 aa

364

729

PPR

PPR_2

PPR_3

PPR

PPR_2

PPR

E_motif

Eplus_motif

DYW_deaminase

PF01535 PPR 88-115 aa PF01535 PPR 162-188 aa PF13041 PPR_2 187-234 aa PF13812 PPR_3 188-231 aa PF01535 PPR 190-220 aa PF01535 PPR 263-291 aa PF01535 PPR 292-320 aa PF13041 PPR_2 320-368 aa PF01535 PPR 324-351 aa PF01535 PPR 397-418 aa PF01535 PPR 426-451 aa PF01535 PPR 457-484 aa PF01535 PPR 495-518 aa PF20431 E_motif 537-599 aa PF20430 Eplus_motif 605-630 aa PF14432 DYW_deaminase 635-729 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	88	115	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	162	188	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF13041`	PPR_2	Repeat	187	234	7.3e-55	183.6	PPR repeat family
`XP_057800632.1`	Pfam	`PF13812`	PPR_3	Repeat	188	231	1.3e-25	89.9	Pentatricopeptide repeat domain
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	190	220	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	263	291	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	292	320	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF13041`	PPR_2	Repeat	320	368	7.3e-55	183.6	PPR repeat family
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	324	351	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	397	418	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	426	451	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	457	484	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF01535`	PPR	Repeat	495	518	2e-64	210.2	PPR repeat
`XP_057800632.1`	Pfam	`PF20431`	E_motif	Repeat	537	599	5.2e-22	78.6	E motif
`XP_057800632.1`	Pfam	`PF20430`	Eplus_motif	Motif	605	630	4.6e-08	33.4	E+ motif
`XP_057800632.1`	Pfam	`PF14432`	DYW_deaminase	Domain	635	729	5.8e-35	119.7	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944649.1
GAGATACTTAAATCCTAAGGAAAGGATCGCGAGGAAGCATCCGATGGCGGCGCCAAGCATACCACTCACCATTTCCCCAACCGTCAATAACGACCGCCACTTCGCAAACCACCCCACAGTCACACTCATCGAAAAATGCTCAAATCCGCAGCAGCTCAAGCAGATCCACGCTCAGATGCTTCGCGTCGGCCTCTTCTTCGACCCTTTCTCCGCCAGTAAGCTCATCCAGTCATCCGCTCTCTCCCAATTCTCCAGCATCG...

CDS

1 records

下载 CDS FASTA

LOC131016075
ATGGCGGCGCCAAGCATACCACTCACCATTTCCCCAACCGTCAATAACGACCGCCACTTCGCAAACCACCCCACAGTCACACTCATCGAAAAATGCTCAAATCCGCAGCAGCTCAAGCAGATCCACGCTCAGATGCTTCGCGTCGGCCTCTTCTTCGACCCTTTCTCCGCCAGTAAGCTCATCCAGTCATCCGCTCTCTCCCAATTCTCCAGCATCGACTACGCCCACAAGGTGTTCGACCAAATTCCCCAACCAAATCT...

Protein

1 records

下载 Protein FASTA

XP_057800632.1
MAAPSIPLTISPTVNNDRHFANHPTVTLIEKCSNPQQLKQIHAQMLRVGLFFDPFSASKLIQSSALSQFSSIDYAHKVFDQIPQPNLYSWNTLIRAYATRSHPLNCLSIFSRLLQDCPEKPNKFTYPFVITALAKLKDLELGKGIHGMAVKEGFSSDLYVANCLIHFYVECGCLDMASRVFSNMPERDVISWNSIVDGMAQNGLFDETMEIFCRMEEEGVRPNDITMVGVLTACRRVKVDVRFGKMVHSYIEKNRIKQSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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