Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002923`

染色体: Chr03 坐标: 45997804-46000324 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002923`
名称	SmilChr03G002923
描述	uncharacterized SmilChr03G002923
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45997804 - 46000324 / `-`

ID 对照

NCBI Gene ID	`LOC131016090`
GeneID	`131016090`
locus_tag	`-`
NCBI Name	`LOC131016090`
原始查询	`LOC131016090`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131016090

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800648.1`
2	Cytoplasm	细胞质	1.00000	`XP_057800649.1`
3	Chromosome	染色体	0.00000	`XP_057800648.1`
4	Centromere	着丝粒	0.00000	`XP_057800648.1`
5	Chromatin	染色质	0.00000	`XP_057800648.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45998034`	`T`	`TGC`	2bp_insertion	frameshift_variant	5	B126,B127,B33,C27,C87
`Chr3:45998034`	`T`	`TGC`	2bp_insertion	CDS_variant	5	B126,B127,B33,C27,C87
`Chr3:45998035`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	A16,B101,B115,B78,B8
`Chr3:45998035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B101,B115,B78,B8
`Chr3:45998037`	`ACC`	`A`	2bp_deletion	frameshift_variant	5	B126,B127,B33,C27,C87
`Chr3:45998037`	`ACC`	`A`	2bp_deletion	CDS_variant	5	B126,B127,B33,C27,C87
`Chr3:45998046`	`A`	`AT`	1bp_insertion	frameshift_variant	5	A16,B101,B115,B78,B8
`Chr3:45998046`	`A`	`AT`	1bp_insertion	CDS_variant	5	A16,B101,B115,B78,B8
`Chr3:45998059`	`TG`	`T`	1bp_deletion	frameshift_variant	47	A14,A24,A5,B103,B104,B105,B106,B110,B111,B113,B118,B120,B124,B129,B133,B138,B20,B28,B29,B30,B31,B32,B34,B37,B38,B39,B45,B65,B74,B76,B81,B90,B92,C20,C25,C28,C32,C38,C5,C60,C62,C7,C73,C76,C81,C9,D11
`Chr3:45998104`	`CGG`	`*`	2bp_deletion	CDS_variant	5	A16,B101,B115,B78,B8
`Chr3:45998159`	`T`	`TC`	1bp_insertion	frameshift_variant	49	A14,A24,A5,B103,B105,B106,B110,B111,B113,B118,B120,B124,B125,B129,B133,B138,B20,B28,B30,B31,B32,B34,B37,B38,B39,B45,B74,B76,B77,B81,B90,B92,C20,C25,C26,C28,C32,C38,C5,C52,C60,C62,C68,C7,C73,C76,C81,C9,D11
`Chr3:45998186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B140,C73,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800648.1

508 aa

254

508

FBA_3

FBA_1

PF08268 FBA_3 38-227 aa PF07734 FBA_1 38-304 aa

XP_057800649.1

363 aa

182

363

FBA_1

FBA_3

PF07734 FBA_1 37-304 aa PF08268 FBA_3 38-227 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800648.1`	Pfam	`PF08268`	FBA_3	Repeat	38	227	2.5e-13	50.4	F-box associated beta propeller domain
`XP_057800648.1`	Pfam	`PF07734`	FBA_1	Repeat	38	304	5.7e-18	65.7	F-box associated beta propeller domain
`XP_057800649.1`	Pfam	`PF07734`	FBA_1	Repeat	37	304	2.4e-18	66.9	F-box associated beta propeller domain
`XP_057800649.1`	Pfam	`PF08268`	FBA_3	Repeat	38	227	1.2e-13	51.5	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944667.1
ATATATAGTTTGATGATTAGCGTGCATGGCATGGGTGAGAGTACTAGTTTTGTGTATATATAATATAAATAATAATAAAAGCTTTTGAGGTGGATTGCTAAGTGCAAATCTACGCGTTAGGGTTCATTCCCTGTCTTCCAAATTCTTCCAAATCCATCATCTAGCTTTCTTTCCATTGATAAATTCTACTAGTTGTTTCAACGCAGGTGTAAACCACATAAGCTTGCTTCAGCGACCTTCGCCCCTCTTTCTGACGCGTT...

XM_057944665.1
TATATAGTTTGATGATTAGCGTGCATGGCATGGGTGAGAGTACTAGTTTTGTGTATATATAATATAAATAATAATAAAAGCTTTTGAGGTGGATTGCTAAGTGCAAATCTACGCGTTAGGGTTCATTCCCTGTCTTCCAAATTCTTCCAAATCCATCATCTAGCTTTCTTTCCATTGATAAATTCTACTAGTTGTTTCAACGCAGGTGTAAACCACATAAGCTTGCTTCAGCGACCTTCGCCCCTCTTTCTGACGCGTTA...

CDS

3 records

下载 CDS FASTA

LOC131016090
ATGAAGAATTCCGACGAGAAACGGCTTCTTGTGAAACGTATCAATGGAGAGTTGGGTACGTATCATTTAACTGCTCTTTCTCCGCGAGATTTATCTGAAATCCGCGAGGAAAGTTTCGACCTCCCTTTTCTGCATCAAACGGAGGATATTGATTTTAACTGTTGCGAGGGTTTGTTGTGTATCTACGAAGTTTCTGGCCATATTTATCTTTGCAACCCCACAACCAAACAGTTTCAGTTCTTTCCTACCGAGGAAGCCTG...

LOC131016090
ATGGAGAGTTGGTTTAATGGTGGAGATTCGTTAGGTGTTGTTCGCATTAAAAATTATGAACCCGGTCATTACTATGAGCTTTGGGTATGGAAAGAAGATTTGTTGCTCTGGAATAGAGAGCTTAATGTCTCTCTTGGTGGTGCTCTTACTGGAGCCCAGGGGACTATATACGGTTCATTCTTCTTTCTTCGTGGAATAGCTGGCAAACCGGATGAGCTCACACATCGTCTAGTAGCTTACGATTGGAATAAGAAAGTGTG...

Protein

3 records

下载 Protein FASTA

XP_057800648.1
MKNSDEKRLLVKRINGELGTYHLTALSPRDLSEIREESFDLPFLHQTEDIDFNCCEGLLCIYEVSGHIYLCNPTTKQFQFFPTEEACPFFKNSTTLVAACVCYDSKSDDYKILRVIKSINRRTYETFELYSLRQNSWTEVGSPRREGCYLNSFSAIPVGGKCYWFVGDCDMVASFDCIEASFSYFDLPPNSDHFYCELVQFNGGDSLGVVRIKNYEPGHYYELWVWKEDLLLWNRELNVSLGGALTGAQGTIYGSFFFLR...

XP_057800649.1
MKNSDEKRLLVKRINGELGTYHLTALSPRDLSEIREESFDLPFLHQTEDIDFNCCEGLLCIYEVSGHIYLCNPTTKQFQFFPTEEACPFFKNSTTLVAACVCYDSKSDDYKILRVIKSINRRTYETFELYSLRQNSWTEVGSPRREGCYLNSFSAIPVGGKCYWFVGDCDMVASFDCIEASFSYFDLPPNSDHFYCELVQFNGGDSLGVVRIKNYEPGHYYELWVWKEDLLLWNRELNVSLGGALTGAQGTIYGSFFFLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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