Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002987`

染色体: Chr03 坐标: 46695374-46700966 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002987`
名称	SmilChr03G002987
描述	transcription factor TGA2.3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46695374 - 46700966 / `-`

ID 对照

NCBI Gene ID	`LOC131016105`
GeneID	`131016105`
locus_tag	`-`
NCBI Name	`LOC131016105`
原始查询	`LOC131016105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor TGA2.3-like
产物	transcription factor TGA2.3-like
Arabidopsis	`AT3G12250` (TGA6) TGACG motif-binding factor 6 [Source:NCBI gene (formerly Entrezgene);Acc:820405] identity=77; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0808100` (OsbZIP08) - identity=81.9; qcov=1.02; evalue=0; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2); PF14144 (DOG1)
InterPro	-
eggNOG	-
NR	GeneID:131016105

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800673.1`
2	Cytoplasm	细胞质	0.40000	`XP_057800673.1`
3	Chromosome	染色体	0.00000	`XP_057800673.1`
4	Centromere	着丝粒	0.00000	`XP_057800673.1`
5	Chromatin	染色质	0.00000	`XP_057800673.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46695732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:46696286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B102,D10
`Chr3:46696391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:46696766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B132,C12
`Chr3:46699804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800673.1

326 aa

163

326

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 40-84 aa PF00170 bZIP_1 41-83 aa PF14144 DOG1 125-199 aa

XP_057800675.1

326 aa

163

326

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 40-84 aa PF00170 bZIP_1 41-83 aa PF14144 DOG1 125-199 aa

XP_057800676.1

326 aa

163

326

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 40-84 aa PF00170 bZIP_1 41-83 aa PF14144 DOG1 125-199 aa

XP_057800677.1

326 aa

163

326

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 40-84 aa PF00170 bZIP_1 41-83 aa PF14144 DOG1 125-199 aa

XP_057800678.1

326 aa

163

326

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 40-84 aa PF00170 bZIP_1 41-83 aa PF14144 DOG1 125-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800673.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	40	84	5.1e-06	27.1	Basic region leucine zipper
`XP_057800673.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	41	83	1.8e-07	31.8	bZIP transcription factor
`XP_057800673.1`	Pfam	`PF14144`	DOG1	Family	125	199	7.3e-32	110.1	Seed dormancy control
`XP_057800675.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	40	84	5.1e-06	27.1	Basic region leucine zipper
`XP_057800675.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	41	83	1.8e-07	31.8	bZIP transcription factor
`XP_057800675.1`	Pfam	`PF14144`	DOG1	Family	125	199	7.3e-32	110.1	Seed dormancy control
`XP_057800676.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	40	84	5.1e-06	27.1	Basic region leucine zipper
`XP_057800676.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	41	83	1.8e-07	31.8	bZIP transcription factor
`XP_057800676.1`	Pfam	`PF14144`	DOG1	Family	125	199	7.3e-32	110.1	Seed dormancy control
`XP_057800677.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	40	84	5.1e-06	27.1	Basic region leucine zipper
`XP_057800677.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	41	83	1.8e-07	31.8	bZIP transcription factor
`XP_057800677.1`	Pfam	`PF14144`	DOG1	Family	125	199	7.3e-32	110.1	Seed dormancy control
`XP_057800678.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	40	84	5.1e-06	27.1	Basic region leucine zipper
`XP_057800678.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	41	83	1.8e-07	31.8	bZIP transcription factor
`XP_057800678.1`	Pfam	`PF14144`	DOG1	Family	125	199	7.3e-32	110.1	Seed dormancy control

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057944695.1
GATTGTACAATTTCACTCAATTTTCTCTCAAGCTCATTACACACTGACACCAGGCTCTCTCTCTCTCTCACAGCTACTTTCCCTCTTTCCCCTTTTAATGTAAAAACCCATGAGAAGCCTCATCGAAACTTCCAACCCCCTAAAAACGAGAGAAATAAATCAAGAAAGGAAAAAGAGACTCAAAGTCAAAACTGGGTTGGAGAACTAATATTTGTCAATAGGACTTCCAATTTCTGCGACCCATATGAGATAGCCAGAGG...

XM_057944693.1
GATTGTACAATTTCACTCAATTTTCTCTCAAGCTCATTACACACTGACACCAGGCTCTCTCTCTCTCTCACAGCTACTTTCCCTCTTTCCCCTTTTAATGTAAAAACCCATGAGAAGCCTCATCGAAACTTCCAACCCCCTAAAAACGAGAGAAATAAATCAAGAAAGGAAAAAGAGACTCAAAGTCAAAACTGGGTAGTAGTAATTTCTCTCTCCACAACACTTCATTCCCTTTGATCTCATTCTTTTCTTTCACTACT...

CDS

5 records

下载 CDS FASTA

LOC131016105
ATGGCAGATACCAGTCCTAGGACAGATACGTCTACTGATGCTGATACGGAAGATAAAATGTTTCAAAGCAATCAATTACAGGGAATAGGTGCTTCCGATGGCAGTGATAAGTCAAGAGATCAAAAGACTCTCCGTAGACTTGCTCAAAATCGTGAAGCTGCAAGGAAAAGCCGTTTGAGAAAAAAGGCCTATGTTCAGCAGCTAGAAAGCAGCAGAATGAAATTGACACAACTTGAGCAAGAGCTTCAACGAGCTAGACA...

Protein

5 records

下载 Protein FASTA

XP_057800673.1
MADTSPRTDTSTDADTEDKMFQSNQLQGIGASDGSDKSRDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGDQSQSIGGNGALAFDVEYARWLEEHNKRINELRGAVNSHAGDGELRIIVDGIVSHYDDIFRIKGDAAKADVFHILSGMWKTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQQSLAETLAGSLGPTGSSGNVANYMG...

XP_057800675.1
MADTSPRTDTSTDADTEDKMFQSNQLQGIGASDGSDKSRDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGDQSQSIGGNGALAFDVEYARWLEEHNKRINELRGAVNSHAGDGELRIIVDGIVSHYDDIFRIKGDAAKADVFHILSGMWKTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQQSLAETLAGSLGPTGSSGNVANYMG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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