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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002929

染色体: Chr03 坐标: 46041459-46045276 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002929
名称SmilChr03G002929
描述histone acetyltransferase MCC1
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46041459 - 46045276 / -

ID 对照

NCBI Gene IDLOC131016115
GeneID131016115
locus_tag-
NCBI NameLOC131016115
原始查询LOC131016115

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述histone acetyltransferase MCC1
产物histone acetyltransferase MCC1
ArabidopsisAT5G16800 (AT5G16800)
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831543]
identity=65.2; qcov=0.85; evalue=8.39e-95; confidence=high
RiceOs02g0694201
-
identity=78.8; qcov=0.283; evalue=1.93e-31; confidence=weak
GOGO:0000139 (Golgi membrane); GO:0004402 (histone acetyltransferase activity); GO:0004596 (protein-N-terminal amino-acid acetyltransferase activity); GO:0017196 (N-terminal peptidyl-methionine acetylation); GO:0043966 (GO:0043966); GO:0043967 (GO:0043967)
KEGG-
PfamPF00583 (Acetyltransf_1); PF08445 (FR47); PF13420 (Acetyltransf_4); PF13508 (Acetyltransf_7)
InterPro-
eggNOG-
NRGeneID:131016115

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057800709.1
2 Cytosol 细胞质基质 0.60000 XP_057800709.1
3 Endoplasmic reticulum 内质网 0.40000 XP_057800707.1
4 Lipid droplet 脂滴 0.20000 XP_057800707.1
5 Nucleus 细胞核 0.00000 XP_057800709.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46041881 C T EMS_canonical_SNV stop_gained 3 A5,B72,C1
Chr3:46041881 C T EMS_canonical_SNV CDS_variant 3 A5,B72,C1
Chr3:46042457 C T EMS_canonical_SNV CDS_variant 1 B130
Chr3:46042510 C T EMS_canonical_SNV CDS_variant 1 A22
Chr3:46042970 G A EMS_canonical_SNV CDS_variant 4 B127,B2,B44,C58
Chr3:46043715 G A EMS_canonical_SNV CDS_variant 2 B130,B56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800707.1
255 aa
N
1
128
255
Acetyltransf_1
Acetyltransf_7
FR47
Acetyltransf_4
C
PF00583 Acetyltransf_1 28-158 aa PF13508 Acetyltransf_7 67-159 aa PF08445 FR47 101-161 aa PF13420 Acetyltransf_4 105-178 aa
XP_057800708.1
255 aa
N
1
128
255
Acetyltransf_1
Acetyltransf_7
FR47
Acetyltransf_4
C
PF00583 Acetyltransf_1 28-158 aa PF13508 Acetyltransf_7 67-159 aa PF08445 FR47 101-161 aa PF13420 Acetyltransf_4 105-178 aa
XP_057800709.1
233 aa
N
1
116
233
Acetyltransf_1
Acetyltransf_7
FR47
Acetyltransf_4
C
PF00583 Acetyltransf_1 28-158 aa PF13508 Acetyltransf_7 67-159 aa PF08445 FR47 101-161 aa PF13420 Acetyltransf_4 105-178 aa
XP_057800710.1
233 aa
N
1
116
233
Acetyltransf_1
Acetyltransf_7
FR47
Acetyltransf_4
C
PF00583 Acetyltransf_1 28-158 aa PF13508 Acetyltransf_7 67-159 aa PF08445 FR47 101-161 aa PF13420 Acetyltransf_4 105-178 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800707.1 Pfam PF00583 Acetyltransf_1 Family 28 158 4.4e-15 56.7 Acetyltransferase (GNAT) family
XP_057800707.1 Pfam PF13508 Acetyltransf_7 Domain 67 159 3.6e-07 31.2 Acetyltransferase (GNAT) domain
XP_057800707.1 Pfam PF08445 FR47 Family 101 161 3.5e-05 24.4 FR47-like protein
XP_057800707.1 Pfam PF13420 Acetyltransf_4 Domain 105 178 1.1e-08 36.0 Acetyltransferase (GNAT) domain
XP_057800708.1 Pfam PF00583 Acetyltransf_1 Family 28 158 4.4e-15 56.7 Acetyltransferase (GNAT) family
XP_057800708.1 Pfam PF13508 Acetyltransf_7 Domain 67 159 3.6e-07 31.2 Acetyltransferase (GNAT) domain
XP_057800708.1 Pfam PF08445 FR47 Family 101 161 3.5e-05 24.4 FR47-like protein
XP_057800708.1 Pfam PF13420 Acetyltransf_4 Domain 105 178 1.1e-08 36.0 Acetyltransferase (GNAT) domain
XP_057800709.1 Pfam PF00583 Acetyltransf_1 Family 28 158 3.5e-15 57.0 Acetyltransferase (GNAT) family
XP_057800709.1 Pfam PF13508 Acetyltransf_7 Domain 67 159 3.1e-07 31.4 Acetyltransferase (GNAT) domain
XP_057800709.1 Pfam PF08445 FR47 Family 101 161 3.5e-05 24.4 FR47-like protein
XP_057800709.1 Pfam PF13420 Acetyltransf_4 Domain 105 178 1.4e-08 35.6 Acetyltransferase (GNAT) domain
XP_057800710.1 Pfam PF00583 Acetyltransf_1 Family 28 158 3.5e-15 57.0 Acetyltransferase (GNAT) family
XP_057800710.1 Pfam PF13508 Acetyltransf_7 Domain 67 159 3.1e-07 31.4 Acetyltransferase (GNAT) domain
XP_057800710.1 Pfam PF08445 FR47 Family 101 161 3.5e-05 24.4 FR47-like protein
XP_057800710.1 Pfam PF13420 Acetyltransf_4 Domain 105 178 1.4e-08 35.6 Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057944724.1
TGATTGAAAAAGATCCCTCACCTGATCTGCACTCATATAAGTTGGTTGACTATTCACTCAAATTCTGGACAAACGAAAAAACTAAATTCTCGAGAATAATACGTAAAGGCGAGTCTTGATTACGCAGAAGAAGGTTCGAAAACGAAAGACGAAGGAAAGAGGGATTTATTCCCTTTTTGCAATCGGAGTCTTATTTCGTATCAGCCAAGGGAACTCGAATAATCGTTCCTTTTTAGGTCCCGTTTCCGCTTCTGTTTCTT...
XM_057944727.1
TTCACTCAAATTCTGGACAAACGAAAAAACTAAATTCTCGAGAATAATACGTAAAGGCGAGTCTTGATTACGCAGAAGAAGGTTCGAAAACGAAAGACGAAGGAAAGAGGGATTTATTCCCTTTTTGCAATCGGAGTCTTATTTCGTATCAGCCAAGGGAACTCGAATAATCGTTCCTTTTTAGGTCCCGTTTCCGCTTCTGTTTCTTCCATCTATGTGGCCCCGATTAAAGGTTGGAACTTTGATTTCTGTTGAATCTT...

CDS

4 records

下载 CDS FASTA
LOC131016115
ATGGTAAGCATCAAAGTTCACCGTCGTCCAGCTATAGCTTATAGGCCGATACAGCCATCTGACTTGGCGATTCTTGAGAGAACTCATGGCGAACTGTTTCCCATAAGGTATGAATCCGAGTTTTTTCACAATGTTGTCACTGGCCATGAAATCGTGTCCTGGGGAGCTGTTGATCAAAGTCGGCCCGATGAACTGAGTGACGAACTTATCGGATTTGTTACTGTAAGAATTATTCCAGCCAAAGATAGTGAGATAGAAGA...
LOC131016115
ATGGTAAGCATCAAAGTTCACCGTCGTCCAGCTATAGCTTATAGGCCGATACAGCCATCTGACTTGGCGATTCTTGAGAGAACTCATGGCGAACTGTTTCCCATAAGGTATGAATCCGAGTTTTTTCACAATGTTGTCACTGGCCATGAAATCGTGTCCTGGGGAGCTGTTGATCAAAGTCGGCCCGATGAACTGAGTGACGAACTTATCGGATTTGTTACTGTAAGAATTATTCCAGCCAAAGATAGTGAGATAGAAGA...

Protein

4 records

下载 Protein FASTA
XP_057800707.1
MVSIKVHRRPAIAYRPIQPSDLAILERTHGELFPIRYESEFFHNVVTGHEIVSWGAVDQSRPDELSDELIGFVTVRIIPAKDSEIEDLLSFEASRTDQTLVYILTLGVVDSYRNLGIASSLIHEVIKYASSLSSCRAVYLHVISYNNPAIHLYKKMSFQCVRRLYNFYYINGQHYDSYLFVYYVNGGRSPCSPLELVTIFVTYARSGFKSMAAKLWKNDERKISKWPKYKESSYLLPTVQTKRILTNEGSRCQFD
XP_057800708.1
MVSIKVHRRPAIAYRPIQPSDLAILERTHGELFPIRYESEFFHNVVTGHEIVSWGAVDQSRPDELSDELIGFVTVRIIPAKDSEIEDLLSFEASRTDQTLVYILTLGVVDSYRNLGIASSLIHEVIKYASSLSSCRAVYLHVISYNNPAIHLYKKMSFQCVRRLYNFYYINGQHYDSYLFVYYVNGGRSPCSPLELVTIFVTYARSGFKSMAAKLWKNDERKISKWPKYKESSYLLPTVQTKRILTNEGSRCQFD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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