Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002950`

染色体: Chr03 坐标: 46223676-46227332 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002950`
名称	SmilChr03G002950
描述	uncharacterized SmilChr03G002950
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46223676 - 46227332 / `-`

ID 对照

NCBI Gene ID	`LOC131016117`
GeneID	`131016117`
locus_tag	`-`
NCBI Name	`LOC131016117`
原始查询	`LOC131016117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase 4 regulatory subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831570]; symbol=AT5G17070; hit=AT5G17070; species=arabidopsis; confidence=high
产物	serine/threonine-protein phosphatase 4 regulatory subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831570]; symbol=AT5G17070; hit=AT5G17070; species=arabidopsis; confidence=high
Arabidopsis	`AT5G17070` (AT5G17070) serine/threonine-protein phosphatase 4 regulatory subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831570] identity=50.2; qcov=0.9; evalue=1.51e-63; confidence=high
Rice	`Os06g0300700` - identity=45; qcov=0.838; evalue=3.2e-45; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006470 (protein dephosphorylation); GO:0019888 (protein phosphatase regulator activity); GO:0030289 (protein phosphatase 4 complex)
KEGG	-
Pfam	PF09184 (PPP4R2)
InterPro	-
eggNOG	-
NR	GeneID:131016117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800713.1`
2	Chromosome	染色体	0.00000	`XP_057800713.1`
3	Centromere	着丝粒	0.00000	`XP_057800713.1`
4	Chromatin	染色质	0.00000	`XP_057800713.1`
5	Telomere	端粒	0.00000	`XP_057800713.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46223887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr3:46223888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,C87
`Chr3:46223941`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr3:46223988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr3:46224007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C37,C38
`Chr3:46224015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr3:46224058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:46224097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B48,C8
`Chr3:46224615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr3:46225244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr3:46226562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,C87
`Chr3:46226570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800713.1

241 aa

120

241

PPP4R2

PF09184 PPP4R2 101-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800713.1`	Pfam	`PF09184`	PPP4R2	Family	101	198	6.8e-11	42.9	PPP4R2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944730.1
GGGAGTGAGCACTAAATGAAGTAGCTCATCCGACACTATTAGTCCAGAAAGAGGGCTTAAGAAGGAGGCTGTTCCAATTTTCCCATTTTCTCTCTCCCAAAATTTCCAACCAAATCTGCACATGGCGACAGCTCTAAGCGAAAATCTGGAGAATTCTTCTGCTCACGGAGATGCCGCTGTGGAGCAGAATCATGAAAGTCCGGATTCTGAATTGCCGAATCACGGAGGATTGGAACCTGAACCATCATTTTCAGAAGAAG...

CDS

1 records

下载 CDS FASTA

LOC131016117
ATGGCGACAGCTCTAAGCGAAAATCTGGAGAATTCTTCTGCTCACGGAGATGCCGCTGTGGAGCAGAATCATGAAAGTCCGGATTCTGAATTGCCGAATCACGGAGGATTGGAACCTGAACCATCATTTTCAGAAGAAGAAGTAAGGAGTGCACTGGGAATAAGTGCATCTTCCGGGAAATTTTGGCTAGATTGGGAAAAACTAAGGAGCATTTTGTCCTACCATCTTAAGCAGGTCCTCACAGAATATCCAGAGTCAAA...

Protein

1 records

下载 Protein FASTA

XP_057800713.1
MATALSENLENSSAHGDAAVEQNHESPDSELPNHGGLEPEPSFSEEEVRSALGISASSGKFWLDWEKLRSILSYHLKQVLTEYPESKMTIEQQTSALGETFQELVRRLDDALHSFDEGPPFTLQRLCEILLSARSIYPKLLKLSLALDKNLLVTSTLKICSDPYPSTTEQNSNGAYEGNGNAPPQNNAVENGGLEAPVEDRDEVMADAQEGEVGEDTTMDMETVEDVAKSPEASPTPKVDA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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