Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002965

染色体: Chr03 坐标: 46398235-46400041 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002965
名称SmilChr03G002965
描述uncharacterized SmilChr03G002965
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46398235 - 46400041 / +

ID 对照

NCBI Gene IDLOC131016122
GeneID131016122
locus_tag-
NCBI NameLOC131016122
原始查询LOC131016122

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os04g0600100; species=rice; confidence=high
产物hit=Os04g0600100; species=rice; confidence=high
ArabidopsisAT2G38695 (AT2G38695)
Gag-Pol polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:2745586]
identity=31; qcov=0.533; evalue=1.55e-13; confidence=low
RiceOs04g0600100
-
identity=73.4; qcov=0.604; evalue=9.53e-56; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016122

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057800719.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057800719.1
3 Chloroplast thylakoid 类囊体 0.80000 XP_057800719.1
4 Nucleus 细胞核 0.00000 XP_057800719.1
5 Chromosome 染色体 0.00000 XP_057800719.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46398536 C T EMS_canonical_SNV CDS_variant 1 B9
Chr3:46398542 C T EMS_canonical_SNV stop_gained 41 A13,A7,A9,B100,B102,B111,B119,B12,B126,B127,B129,B13,B132,B135,B17,B18,B19,B34,B40,B44,B47,B57,B61,B67,B72,B73,B85,B86,B94,B97,C12,C14,C27,C29,C36,C46,C49,C55,D1,D2,D5
Chr3:46398622 C T EMS_canonical_SNV CDS_variant 1 A11
Chr3:46398624 G A EMS_canonical_SNV CDS_variant 1 B104
Chr3:46398722 C T EMS_canonical_SNV CDS_variant 1 B9
Chr3:46398860 C T EMS_canonical_SNV CDS_variant 2 C13,C87
Chr3:46399644 C T EMS_canonical_SNV CDS_variant 2 B130,B9
Chr3:46399650 G A EMS_canonical_SNV CDS_variant 3 C25,C77,D10
Chr3:46399669 G A EMS_canonical_SNV CDS_variant 2 C25,C77
Chr3:46399719 G A EMS_canonical_SNV CDS_variant 5 A10,A18,B133,B90,B92
Chr3:46399751 C T EMS_canonical_SNV CDS_variant 1 B104
Chr3:46399818 G A EMS_canonical_SNV CDS_variant 4 B104,B9,C15,C20

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057944738.1
TCCACACCCAAATAACAGTGTCACAAGATTTCTTGAAGCTCAATTCTGAGTGATTTTAGATCAATCACAAATATTAAAATTCGAATTTTACTTTTATTGAATTTGAGTAAATTTTGATATGTAAAATAACTAAACCCAACTCCAACCACTTGTTTATCAAGACAGTGTGTGAAGGATGTGGGCTGCTGCTTCTCTCTCTGCACCTTCTTGTGCTGCACTACACACAATATTCCACAAACCCATCAAAACTAAATATTTTC...
XM_057944736.1
ACCCAAATAACAGTGTCACAAGATTTCTTGAAGCTCAATTCTGAGTGATTTTAGATCAATCACAAATATTAAAATTCGAATTTTACTTTTATTGAATTTGAGTAAATTTTGATATGTAAAATAACTAAACCCAACTCCAACCACTTGTTTATCAAGACAGTGTGTGAAGGATGTGGGCTGCTGCTTCTCTCTCTGCACCTTCTTGTGCTGCACTACACACAATATTCCACAAACCCATCAAAACTAAATATTTTCACAAT...

CDS

2 records

下载 CDS FASTA
LOC131016122
ATGTGGGCTGCTGCTTCTCTCTCTGCACCTTCTTGTGCTGCACTACACACAATATTCCACAAACCCATCAAAACTAAATATTTTCACAATAAAGACTCGATTTTTACTCATAAATTGCTTCGAAATCCAAGGCAAATCAACGAGCCCGCCACCGTTTCAGTCAGCTTTTGTGCTACTTCTGAAGATTCTTTCCTCCATCCAAATCAAGATTTCAGTAATAATCAGGAAAACAAAGGATTCTGGCAGAAATGGAAGGAAAA...
LOC131016122
ATGTGGGCTGCTGCTTCTCTCTCTGCACCTTCTTGTGCTGCACTACACACAATATTCCACAAACCCATCAAAACTAAATATTTTCACAATAAAGACTCGATTTTTACTCATAAATTGCTTCGAAATCCAAGGCAAATCAACGAGCCCGCCACCGTTTCAGTCAGCTTTTGTGCTACTTCTGAAGATTCTTTCCTCCATCCAAATCAAGATTTCAGTAATGAAAACAAAGGATTCTGGCAGAAATGGAAGGAAAATTCAGC...

Protein

2 records

下载 Protein FASTA
XP_057800719.1
MWAAASLSAPSCAALHTIFHKPIKTKYFHNKDSIFTHKLLRNPRQINEPATVSVSFCATSEDSFLHPNQDFSNNQENKGFWQKWKENSAKMSRKVAKLGLAAVLAYGIFDGVTYTSFFVAAFLGYEKSTGNNPAANLQALLGIVILMWGGNNVTRPFRVAGAAAMAPLIDTGLRRIQKYFNFPSVTYAFGLVAGIVVGLCATAVGLLVLSRWGK
XP_057800721.1
MWAAASLSAPSCAALHTIFHKPIKTKYFHNKDSIFTHKLLRNPRQINEPATVSVSFCATSEDSFLHPNQDFSNENKGFWQKWKENSAKMSRKVAKLGLAAVLAYGIFDGVTYTSFFVAAFLGYEKSTGNNPAANLQALLGIVILMWGGNNVTRPFRVAGAAAMAPLIDTGLRRIQKYFNFPSVTYAFGLVAGIVVGLCATAVGLLVLSRWGK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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