Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003001`

染色体: Chr03 坐标: 46822405-46828848 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003001`
名称	SmilChr03G003001
描述	WAT1-related protein At1g43650-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46822405 - 46828848 / `+`

ID 对照

NCBI Gene ID	`LOC131016153`
GeneID	`131016153`
locus_tag	`-`
NCBI Name	`LOC131016153`
原始查询	`LOC131016153`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At1g43650-like
产物	WAT1-related protein At1g43650-like
Arabidopsis	`AT5G07050` (UMAMIT9) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:830596] identity=27.8; qcov=1.14; evalue=7.92e-46; confidence=low
Rice	`Os12g0288000` (OsSTA278) - identity=35.7; qcov=1; evalue=1.27e-72; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131016153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057800748.1`
2	Vacuole	液泡	0.20000	`XP_057800748.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057800748.1`
4	Nucleus	细胞核	0.00000	`XP_057800748.1`
5	Chromosome	染色体	0.00000	`XP_057800748.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46822545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B29,B81,C3,C87
`Chr3:46822546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B29,B66,B91,D7
`Chr3:46822548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:46822611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr3:46822661`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B65
`Chr3:46822661`	`TC`	`T`	1bp_deletion	CDS_variant	1	B65
`Chr3:46822806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B87
`Chr3:46825176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr3:46825315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,C45
`Chr3:46825330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,B83
`Chr3:46825338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:46825348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B66,B91,B95,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800748.1

377 aa

188

377

EamA

PF00892 EamA 14-151 aa PF00892 EamA 180-316 aa

XP_057800749.1

338 aa

169

338

EamA

PF00892 EamA 141-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800748.1`	Pfam	`PF00892`	EamA	Domain	14	151	2.2e-18	67.6	EamA-like transporter family
`XP_057800748.1`	Pfam	`PF00892`	EamA	Domain	180	316	2.2e-18	67.6	EamA-like transporter family
`XP_057800749.1`	Pfam	`PF00892`	EamA	Domain	141	277	3.5e-07	31.3	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944766.1
TCTCGTCTTGTTTTTTTTGGGAAGGGACTATATATATTTCTCTCTTTAGTACTTTCCAAGTAAATTCTCACACAAAACTAATAGACGGTGCAGGGTTCTATGGAGTTAAAGAAAGGAATCATGAATGCAAGAGTACTACTGGGGATGCTAGTGGTACAAGTCATCGCAACGGGGCTGCAAATACTTTCTAGGGTTATACTGAGTGAGGGTACTTTCATTTTTGCCCTCATGAGCTATCGCAACGTCGTCGCTGCCTTCGC...

XM_057944765.1
CTCGTCTTGTTTTTTTTGGGAAGGGACTATATATATTTCTCTCTTTAGTACTTTCCAAGTAAATTCTCACACAAAACTAATAGACGGTGCAGGGTTCTATGGAGTTAAAGAAAGGAATCATGAATGCAAGAGTACTACTGGGGATGCTAGTGGTACAAGTCATCGCAACGGGGCTGCAAATACTTTCTAGGGTTATACTGAGTGAGGGTACTTTCATTTTTGCCCTCATGAGCTATCGCAACGTCGTCGCTGCCTTCGCC...

CDS

2 records

下载 CDS FASTA

LOC131016153
ATGGAGTTAAAGAAAGGAATCATGAATGCAAGAGTACTACTGGGGATGCTAGTGGTACAAGTCATCGCAACGGGGCTGCAAATACTTTCTAGGGTTATACTGAGTGAGGGTACTTTCATTTTTGCCCTCATGAGCTATCGCAACGTCGTCGCTGCCTTCGCCGTCGCGCCCTTTGCGCTATATTTCGAAAGAGGCGCTCTAAGGAAAATCAGTTTTGAAGCTTTTCTATGGCTTTTCATGGTAGCACTAACAGGGATATT...

Protein

2 records

下载 Protein FASTA

XP_057800748.1
MELKKGIMNARVLLGMLVVQVIATGLQILSRVILSEGTFIFALMSYRNVVAAFAVAPFALYFERGALRKISFEAFLWLFMVALTGILMAMGLFYYGLRDTSATYATNFLNLIPAVTFVLSTILRIEKLNVHTKAGKMKIAGAMLCFAGALTMALYKGESFNLSIYNQHKILVKTHQNNTRGTMLLIGSCLSYGCWFILQVELFKVFPHRYSGTMIICIIASVQATLVGLCVDRKPMSWRLGWNLQLLTIFYSGVLATAAT...

XP_057800749.1
MELKKGIMNARVLLGMLVVQVIATGLQILSRVILSEGTFIFALMSYRNVVAAFAVAPFALYFERGALRKISFEAFLWLFMVALTGIEKLNVHTKAGKMKIAGAMLCFAGALTMALYKGESFNLSIYNQHKILVKTHQNNTRGTMLLIGSCLSYGCWFILQVELFKVFPHRYSGTMIICIIASVQATLVGLCVDRKPMSWRLGWNLQLLTIFYSGVLATAATFALISMAIIAKGPTYPSMFNPLSLIFILIIEAIFFAQDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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