Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003002`

染色体: Chr03 坐标: 46870534-46874631 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003002`
名称	SmilChr03G003002
描述	uncharacterized calcium-binding protein At1g02270-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46870534 - 46874631 / `+`

ID 对照

NCBI Gene ID	`LOC131016155`
GeneID	`131016155`
locus_tag	`-`
NCBI Name	`LOC131016155`
原始查询	`LOC131016155`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-binding endonuclease/exonuclease/phosphatase family [Source:NCBI gene (formerly Entrezgene);Acc:835500]; symbol=AT5G54130; hit=AT5G54130; species=arabidopsis; confidence=high
产物	Calcium-binding endonuclease/exonuclease/phosphatase family [Source:NCBI gene (formerly Entrezgene);Acc:835500]; symbol=AT5G54130; hit=AT5G54130; species=arabidopsis; confidence=high
Arabidopsis	`AT5G54130` (AT5G54130) Calcium-binding endonuclease/exonuclease/phosphatase family [Source:NCBI gene (formerly Entrezgene);Acc:835500] identity=74.7; qcov=0.982; evalue=0; confidence=high
Rice	`Os10g0203000` - identity=65.1; qcov=0.962; evalue=0; confidence=high
GO	GO:0000175 (3'-5'-RNA exonuclease activity)
KEGG	-
Pfam	PF03372 (Exo_endo_phos)
InterPro	-
eggNOG	-
NR	GeneID:131016155

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057800750.1`
2	Cytoplasm	细胞质	0.20000	`XP_057800750.1`
3	Mitochondrion	线粒体	0.20000	`XP_057800750.1`
4	Nucleus	细胞核	0.00000	`XP_057800750.1`
5	Chromosome	染色体	0.00000	`XP_057800750.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46870933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46871466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:46871512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:46872466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,B76
`Chr3:46872796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46872958`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C1
`Chr3:46872958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:46872993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:46873008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C25
`Chr3:46873221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,D7
`Chr3:46873523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46873699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800750.1

447 aa

224

447

Exo_endo_phos

PF03372 Exo_endo_phos 59-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800750.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	59	270	1.3e-08	35.6	Endonuclease/Exonuclease/phosphatase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944767.1
TTGACTAAAATTATACCCACTAATTATTAAAAAGAATACACAGCGCTTCTCTCTCCTCTTCCACAGTCTCTCTCTGTCTCTCTCTCCGATATATATACATTGCATTGTGAGTTTGGACTGATTATCATCGTTCGTTGAGTTAATCGTCACCATATATACAAACCTTCCAAGATTACAAAAAACAATCAAGAAATCCTTCTGTTTTCCTCGTAAAAAAGGAAGGAAAATTTCAGTCCTTTTTTCTTGATTCTTGAAATTCT...

CDS

1 records

下载 CDS FASTA

LOC131016155
ATGGGGAGGAAGAACAGAACCTTAAACAACGGGAGATTGTCAAGAATCGGCAGCTACGCCATAGCTTCATCGATTAAGGACCCCTCTTCCATTTCCTGTACGACCTTCAACATCCTCGCACCTATTTACAAAAGGCTCAATCACGAGGACCCCAGCTTCAGAGAAAGTGATGTTAAAGATCATTGGATGGATAGAAATCAGAGGATTTTGAATTGGTTATTGTGTGAGAGATCTTCCATAATCTGTCTTCAGGAATTCTG...

Protein

1 records

下载 Protein FASTA

XP_057800750.1
MGRKNRTLNNGRLSRIGSYAIASSIKDPSSISCTTFNILAPIYKRLNHEDPSFRESDVKDHWMDRNQRILNWLLCERSSIICLQEFWVGNEELVSIYDKRLGDAGYLNFKLARTNNRGDGLLTAVHKDYFRVINHRELLFNDFGDRVAQLLHVELNAPFSQNLNSHVRQELLIVNTHLLFPHNSSMCLERLRQVYKILQYVESYQKENKLKPLPILLCGDWNGSKRGHIYKFLRSQGFVSSYDTAHQYTDADAHKWVSHR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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