Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003008`

染色体: Chr03 坐标: 46918583-46920381 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003008`
名称	SmilChr03G003008
描述	heavy metal-associated isoprenylated plant protein 9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46918583 - 46920381 / `+`

ID 对照

NCBI Gene ID	`LOC131016158`
GeneID	`131016158`
locus_tag	`-`
NCBI Name	`LOC131016158`
原始查询	`LOC131016158`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heavy metal-associated isoprenylated plant protein 9
产物	heavy metal-associated isoprenylated plant protein 9
Arabidopsis	`AT5G24580` (AT5G24580) Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832529] identity=58.5; qcov=0.922; evalue=1.42e-98; confidence=high
Rice	`Os03g0861400` - identity=49.8; qcov=0.675; evalue=4.31e-53; confidence=high
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00403 (HMA)
InterPro	-
eggNOG	-
NR	GeneID:131016158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057800755.1`
2	Cell membrane	细胞膜	0.40000	`XP_057800755.1`
3	Nucleus	细胞核	0.00000	`XP_057800755.1`
4	Chromosome	染色体	0.00000	`XP_057800755.1`
5	Centromere	着丝粒	0.00000	`XP_057800755.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46918883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:46918932`	`GA`	`G`	1bp_deletion	frameshift_variant	91	A10,A15,A22,A3,A7,A9,B100,B104,B114,B117,B119,B12,B121,B122,B123,B125,B127,B13,B131,B136,B137,B14,B17,B18,B2,B22,B23,B29,B31,B32,B33,B34,B4,B41,B48,B51,B55,B56,B6,B60,B61,B63,B66,B70,B71,B72,B74,B76,B80,B81,B82,B83,B85,B87,B88,B89,B95,B96,B98,C10,C12,C13,C21,C22,C25,C26,C34,C36,C37,C40,C42,C47,C49,C50,C52,C55,C59,C60,C62,C63,C64,C66,C67,C70,C77,C80,C82,D4,D5,D8,D9
`Chr3:46918939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:46918957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr3:46919139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:46919225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:46919887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B29,B66,B91,D7
`Chr3:46919949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46919997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46920008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:46920017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,C61
`Chr3:46920081`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800755.1

295 aa

148

295

HMA

PF00403 HMA 52-95 aa PF00403 HMA 140-184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800755.1`	Pfam	`PF00403`	HMA	Domain	52	95	7.2e-21	75.0	Heavy-metal-associated domain
`XP_057800755.1`	Pfam	`PF00403`	HMA	Domain	140	184	7.2e-21	75.0	Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944772.1
TTTCTTTACAAATCCCGCCCCTCATTTTTTTGTTTTTGTTTCCCATATAAATTCTTCTCCTCATTCTCTCCAATTCTCCCTCCTCTCTCTCTCTCTCGCTCTATTCTGCTAATCCTTTTTATTTAATTAAAATAAACATTTAGTGATCGTCACAATGGGCGAAGAAGCCAAAGTTCAGGAAGAAGAAGTGAAGGCCGAGGAGAAGAAGGAAGAGGCGAAGGTTGAGGGAAATGTAGAGGAGAAGAAAGAGGAAGAAGAGC...

CDS

1 records

下载 CDS FASTA

LOC131016158
ATGGGCGAAGAAGCCAAAGTTCAGGAAGAAGAAGTGAAGGCCGAGGAGAAGAAGGAAGAGGCGAAGGTTGAGGGAAATGTAGAGGAGAAGAAAGAGGAAGAAGAGCCCAAGAAAGAAGAAGAGGAAGCGACGAAGCCGCCATTGCCATTTGTGCTGTTTGTGGACTTGCATTGTGTGGGATGTGCCAAGAAGATTGAGCGCTTTATTCTCAAGATTAGAGGAGTTGAGGGAGTGGCGATGGACATGGCGAAGAATGAGGT...

Protein

1 records

下载 Protein FASTA

XP_057800755.1
MGEEAKVQEEEVKAEEKKEEAKVEGNVEEKKEEEEPKKEEEEATKPPLPFVLFVDLHCVGCAKKIERFILKIRGVEGVAMDMAKNEVTIKGVIEPQAVCSRIMKKTKRRAKVLSPLPQAEGQPMPEIVASQVSGLATIELNVNMHCEACAEQLKKKILKMKGVRTAETELSSGKVTVTGTMDADRLVDYVYRRTKKQAKVVPQPEPEKPPEESPKPEEKPADAKPAEEEKKEEGDKKEEEGGTAAEEEEEEDKSMEEPGM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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