当前解析结果
SmilChr03G003013| 统一新 Gene ID | SmilChr03G003013 |
|---|---|
| 名称 | SmilChr03G003013 |
| 描述 | nascent polypeptide-associated complex subunit alpha-like protein 2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47022961 - 47024836 / - |
| NCBI Gene ID | LOC131016164 |
|---|---|
| GeneID | 131016164 |
| locus_tag | - |
| NCBI Name | LOC131016164 |
| 原始查询 | LOC131016164 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nascent polypeptide-associated complex subunit alpha-like protein 2 |
| 产物 | nascent polypeptide-associated complex subunit alpha-like protein 2 |
| Arabidopsis | AT3G49470 (NACA2)nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:824109] identity=74.6; qcov=0.961; evalue=3.29e-85; confidence=high |
| Rice | Os05g0373700- identity=75.5; qcov=0.737; evalue=1.99e-76; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005854 (nascent polypeptide-associated complex); GO:0006612 (protein targeting to membrane); GO:0051082 (GO:0051082) |
| KEGG | - |
| Pfam | PF01849 (NAC); PF19026 (UBA_HYPK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016164 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800773.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057800773.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057800773.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057800773.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800773.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47023245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C61 |
Chr3:47023266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C61 |
Chr3:47023326 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr3:47023326 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B35 |
Chr3:47023616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B64,B84,C80,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800773.1PF01849
NAC 61-116 aa
PF19026
UBA_HYPK 165-204 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800773.1 |
Pfam | PF01849 |
NAC | Family | 61 | 116 | 4.9e-22 | 78.3 | NAC domain |
XP_057800773.1 |
Pfam | PF19026 |
UBA_HYPK | Domain | 165 | 204 | 8.3e-14 | 51.4 | HYPK UBA domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。