Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003015`

染色体: Chr03 坐标: 47056439-47059206 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003015`
名称	SmilChr03G003015
描述	caffeic acid 3-O-methyltransferase 1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47056439 - 47059206 / `+`

ID 对照

NCBI Gene ID	`LOC131016166`
GeneID	`131016166`
locus_tag	`-`
NCBI Name	`LOC131016166`
原始查询	`LOC131016166`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	caffeic acid 3-O-methyltransferase 1
产物	caffeic acid 3-O-methyltransferase 1
Arabidopsis	`AT5G54160` (OMT1) O-methyltransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:835504] identity=75.3; qcov=1; evalue=0; confidence=high
Rice	`Os08g0157500` (ROMT9) - identity=62.1; qcov=0.964; evalue=5.63e-152; confidence=high
GO	GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0019438 (GO:0019438); GO:0032259 (methylation); GO:0046983 (protein dimerization activity)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00891 (Methyltransf_2); PF08100 (Dimerisation)
InterPro	-
eggNOG	-
NR	GeneID:131016166

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800775.1`
2	Cytosol	细胞质基质	1.00000	`XP_057800776.1`
3	Nucleus	细胞核	0.00000	`XP_057800775.1`
4	Chromosome	染色体	0.00000	`XP_057800775.1`
5	Centromere	着丝粒	0.00000	`XP_057800775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47056800`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A16
`Chr3:47056800`	`GC`	`G`	1bp_deletion	CDS_variant	1	A16
`Chr3:47057034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B31,B68,B71,B93,C42
`Chr3:47057102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr3:47057105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B49,B79,C8
`Chr3:47058241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B18,B19,B85,C18
`Chr3:47058570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:47058599`	`TA`	`T`	1bp_deletion	frameshift_variant	147	A1,A13,A15,A16,A18,A19,A2,A23,A25,A4,A5,A7,A8,B1,B10,B101,B102,B105,B106,B107,B108,B109,B11,B110,B112,B113,B115,B120,B124,B125,B129,B132,B133,B138,B139,B140,B15,B16,B19,B20,B21,B24,B25,B26,B27,B3,B30,B34,B35,B36,B37,B38,B39,B4,B42,B43,B44,B45,B47,B49,B50,B58,B59,B60,B61,B63,B64,B65,B67,B74,B75,B77,B78,B8,B80,B84,B86,B89,B9,B90,B91,B92,B93,B97,B99,C1,C11,C12,C14,C16,C17,C19,C20,C23,C24,C26,C27,C28,C29,C3,C30,C31,C32,C35,C36,C38,C39,C4,C41,C43,C44,C45,C46,C48,C5,C51,C54,C56,C58,C6,C61,C65,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C8,C83,C85,C86,C9,D1,D10,D11,D2,D3,D5,D6,D7
`Chr3:47058608`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C42
`Chr3:47058608`	`AC`	`A`	1bp_deletion	CDS_variant	1	C42
`Chr3:47058609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:47058676`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800775.1

391 aa

196

391

Dimerisation

Methyltransf_2

PF08100 Dimerisation 25-118 aa PF00891 Methyltransf_2 141-266 aa PF00891 Methyltransf_2 291-373 aa

XP_057800776.1

364 aa

182

364

Dimerisation

Methyltransf_2

PF08100 Dimerisation 25-118 aa PF00891 Methyltransf_2 141-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800775.1`	Pfam	`PF08100`	Dimerisation	Domain	25	118	2e-18	66.8	O-methyltransferase dimerisation domain
`XP_057800775.1`	Pfam	`PF00891`	Methyltransf_2	Domain	141	266	6.2e-74	248.6	O-methyltransferase domain
`XP_057800775.1`	Pfam	`PF00891`	Methyltransf_2	Domain	291	373	6.2e-74	248.6	O-methyltransferase domain
`XP_057800776.1`	Pfam	`PF08100`	Dimerisation	Domain	25	118	1.9e-18	66.9	O-methyltransferase dimerisation domain
`XP_057800776.1`	Pfam	`PF00891`	Methyltransf_2	Domain	141	346	4.2e-79	265.5	O-methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944792.1
AAACTAATTTCTTTTCATTAATCTATGCACTTATAAATCATGAAGAAATACCGAAAGAACTAATTGCAATCAAAACAAGCAACTTGAAGAAAATGAAAGGTGGGTAGTGTGATCTTTCTATAGTGGGGTCTATTATTTCACCCACTACAAAGTTTGGTGAACTCAAAACACCATATATACTCATCTTTTCCCATCTCAAATAATCACCACCCACGCCACCCCACCCCACCCACCCCCCTCCCTTTTGATCAAAAAGCATT...

XM_057944793.1
AAACTAATTTCTTTTCATTAATCTATGCACTTATAAATCATGAAGAAATACCGAAAGAACTAATTGCAATCAAAACAAGCAACTTGAAGAAAATGAAAGGTGGGTAGTGTGATCTTTCTATAGTGGGGTCTATTATTTCACCCACTACAAAGTTTGGTGAACTCAAAACACCATATATACTCATCTTTTCCCATCTCAAATAATCACCACCCACGCCACCCCACCCCACCCACCCCCCTCCCTTTTGATCAAAAAGCATT...

CDS

2 records

下载 CDS FASTA

LOC131016166
ATGGGTTCAACAACCAAGAATCCCCAAACCGCAGCCGTGAACTCCGATGAAGAAGAGAGCTTCCTCTTCGCCATGCAGCTGGCGAGCGCCTCCGTGCTGCCCATGGTGCTCAAATCCGCCATCGAGCTCGACCTGCTCGAGATCATCAAGAAGGCCGGCGCCGGCGCCTTCGTCTCCCCGGCGGAGGTCGCCGCGCAGCTCCCCACCACCAACGAGGGGGCCGCCGTGATGCTCGACAGGATCCTCCGCCTCCTCGCCAG...

Protein

2 records

下载 Protein FASTA

XP_057800775.1
MGSTTKNPQTAAVNSDEEESFLFAMQLASASVLPMVLKSAIELDLLEIIKKAGAGAFVSPAEVAAQLPTTNEGAAVMLDRILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNDDGVSVAPLALMNQDKVLMESWYHLKDAVLDGEIPFNKAYGMSAFEYHGTDPRFNKVFNQGMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKG...

XP_057800776.1
MGSTTKNPQTAAVNSDEEESFLFAMQLASASVLPMVLKSAIELDLLEIIKKAGAGAFVSPAEVAAQLPTTNEGAAVMLDRILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNDDGVSVAPLALMNQDKVLMESWYHLKDAVLDGEIPFNKAYGMSAFEYHGTDPRFNKVFNQGMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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