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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003054

染色体: Chr03 坐标: 47446070-47451652 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003054
名称SmilChr03G003054
描述probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向47446070 - 47451652 / +

ID 对照

NCBI Gene IDLOC131016202
GeneID131016202
locus_tag-
NCBI NameLOC131016202
原始查询LOC131016202

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
产物probable N-acetyl-gamma-glutamyl-phosphate reductase%2C chloroplastic
ArabidopsisAT2G19940 (AT2G19940)
Putative N-acetyl-gamma-glutamyl-phosphate reductase [Source:NCBI gene (formerly Entrezgene);Acc:816513]
identity=71.9; qcov=0.958; evalue=0; confidence=high
RiceOs03g0617900
-
identity=72.6; qcov=0.965; evalue=0; confidence=high
GOGO:0003942 (N-acetyl-gamma-glutamyl-phosphate reductase activity); GO:0006526 (L-arginine biosynthetic process); GO:0046983 (protein dimerization activity); GO:0051287 (NAD binding); GO:0070401 (NADP+ binding)
KEGGsmil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
PfamPF01118 (Semialdhyde_dh); PF02774 (Semialdhyde_dhC); PF22698 (Semialdhyde_dhC_1)
InterPro-
eggNOG-
NRGeneID:131016202

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057800820.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057800820.1
3 Nucleus 细胞核 0.00000 XP_057800820.1
4 Chromosome 染色体 0.00000 XP_057800820.1
5 Centromere 着丝粒 0.00000 XP_057800820.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:47448645 G A EMS_canonical_SNV CDS_variant 1 B34
Chr3:47448686 C T EMS_canonical_SNV CDS_variant 1 D10
Chr3:47449077 C T EMS_canonical_SNV CDS_variant 4 B27,B99,C14,C44
Chr3:47449408 G A EMS_canonical_SNV CDS_variant 1 B34
Chr3:47451166 C T EMS_canonical_SNV CDS_variant 1 B32
Chr3:47451227 C T EMS_canonical_SNV CDS_variant 3 B100,B125,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800820.1
401 aa
N
1
200
401
Semialdhyde_dh
Semialdhyde_dhC_1
Semialdhyde_dhC
C
PF01118 Semialdhyde_dh 60-197 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa
XP_057800821.1
401 aa
N
1
200
401
Semialdhyde_dh
Semialdhyde_dhC_1
Semialdhyde_dhC
C
PF01118 Semialdhyde_dh 60-197 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa
XP_057800822.1
401 aa
N
1
200
401
Semialdhyde_dh
Semialdhyde_dhC_1
Semialdhyde_dhC
C
PF01118 Semialdhyde_dh 60-197 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa
XP_057800823.1
401 aa
N
1
200
401
Semialdhyde_dh
Semialdhyde_dhC_1
Semialdhyde_dhC
C
PF01118 Semialdhyde_dh 60-197 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa
XP_057800824.1
401 aa
N
1
200
401
Semialdhyde_dh
Semialdhyde_dhC_1
Semialdhyde_dhC
C
PF01118 Semialdhyde_dh 60-197 aa PF22698 Semialdhyde_dhC_1 205-369 aa PF02774 Semialdhyde_dhC 214-372 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800820.1 Pfam PF01118 Semialdhyde_dh Domain 60 197 1.3e-27 97.3 Semialdehyde dehydrogenase, NAD binding domain
XP_057800820.1 Pfam PF22698 Semialdhyde_dhC_1 Domain 205 369 2e-61 207.3 Semialdehyde dehydrogenase, dimerisation domain
XP_057800820.1 Pfam PF02774 Semialdhyde_dhC Domain 214 372 3e-22 80.4 Semialdehyde dehydrogenase, dimerisation domain
XP_057800821.1 Pfam PF01118 Semialdhyde_dh Domain 60 197 1.3e-27 97.3 Semialdehyde dehydrogenase, NAD binding domain
XP_057800821.1 Pfam PF22698 Semialdhyde_dhC_1 Domain 205 369 2e-61 207.3 Semialdehyde dehydrogenase, dimerisation domain
XP_057800821.1 Pfam PF02774 Semialdhyde_dhC Domain 214 372 3e-22 80.4 Semialdehyde dehydrogenase, dimerisation domain
XP_057800822.1 Pfam PF01118 Semialdhyde_dh Domain 60 197 1.3e-27 97.3 Semialdehyde dehydrogenase, NAD binding domain
XP_057800822.1 Pfam PF22698 Semialdhyde_dhC_1 Domain 205 369 2e-61 207.3 Semialdehyde dehydrogenase, dimerisation domain
XP_057800822.1 Pfam PF02774 Semialdhyde_dhC Domain 214 372 3e-22 80.4 Semialdehyde dehydrogenase, dimerisation domain
XP_057800823.1 Pfam PF01118 Semialdhyde_dh Domain 60 197 1.3e-27 97.3 Semialdehyde dehydrogenase, NAD binding domain
XP_057800823.1 Pfam PF22698 Semialdhyde_dhC_1 Domain 205 369 2e-61 207.3 Semialdehyde dehydrogenase, dimerisation domain
XP_057800823.1 Pfam PF02774 Semialdhyde_dhC Domain 214 372 3e-22 80.4 Semialdehyde dehydrogenase, dimerisation domain
XP_057800824.1 Pfam PF01118 Semialdhyde_dh Domain 60 197 1.3e-27 97.3 Semialdehyde dehydrogenase, NAD binding domain
XP_057800824.1 Pfam PF22698 Semialdhyde_dhC_1 Domain 205 369 2e-61 207.3 Semialdehyde dehydrogenase, dimerisation domain
XP_057800824.1 Pfam PF02774 Semialdhyde_dhC Domain 214 372 3e-22 80.4 Semialdehyde dehydrogenase, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057944839.1
TTTTTTATTCGTCTTTCCTTCAATCTCTCTCTCTCTCTGTGTTTTCGGCCGCTCGTCGAAGCCACTCGCCCCCTCCGGCCCACGCCGCTCGCCTCGTCCGCCTCGAAATATCTACAGAAACAGCCTGCGTCGTGTTCCGCCTCACTGTGCAGCCTATCAGTTTTCGTTGTCCTGCTTCCTCCGGCCTCGGCCCATCCGTCCGGCGACTCTTTAGCAGCTCTGCCGACACCTCCCCAACCCAACGCCTAATAGCAGAAGCA...
XM_057944840.1
TTTTTTATTCGTCTTTCCTTCAATCTCTCTCTCTCTCTGTGTTTTCGGCCGCTCGTCGAAGCCACTCGCCCCCTCCGGCCCACGCCGCTCGCCTCGTCCGCCTCGAAATATCTACAGAAACAGCCTGCGTCGTGTTCCGCCTCACTGTGCAGCCTATCAGTTTTCGTTGTCCTGCTTCCTCCGGCCTCGGCCCATCCGTCCGGCGACTCTTTAGCAGCTCTGCCGACACCTCCCCAACCCAACGCCTAATAGCAGGATCG...

CDS

5 records

下载 CDS FASTA
LOC131016202
ATGGGTTCTTTGGCTGCTTTGCATTCAATCAGCAGCGTTCGGGGCTGCCTTATTAAATATCAGGATGAAATAAAAAATTCAACGGTTAAGAAGCTCAGTGTTAGAGCTTCTGTTGCTACATCAACGCCACAAAACTTTCAAGTTGAAGAAAATAAAGCCAATATATTGGAAAAGTTCCGAATTGGTGTGCTTGGGGCGAGTGGCTACACTGGTTCTGAGATAATTAAGCTATTGGCAAATCATCCGAACTATCAAATAAA...
LOC131016202
ATGGGTTCTTTGGCTGCTTTGCATTCAATCAGCAGCGTTCGGGGCTGCCTTATTAAATATCAGGATGAAATAAAAAATTCAACGGTTAAGAAGCTCAGTGTTAGAGCTTCTGTTGCTACATCAACGCCACAAAACTTTCAAGTTGAAGAAAATAAAGCCAATATATTGGAAAAGTTCCGAATTGGTGTGCTTGGGGCGAGTGGCTACACTGGTTCTGAGATAATTAAGCTATTGGCAAATCATCCGAACTATCAAATAAA...

Protein

5 records

下载 Protein FASTA
XP_057800820.1
MGSLAALHSISSVRGCLIKYQDEIKNSTVKKLSVRASVATSTPQNFQVEENKANILEKFRIGVLGASGYTGSEIIKLLANHPNYQIKLMTADRKAGQSIGSVFPHLVKQDLPNMVAVKDADFSNVDAVFCCLPHGTTQEIIKSLPSSLKIVDLSADFRLRNVNEYEEWYGQPHRAQELQKEAVYGLTEISRPEIQNARLVANPGCYPTSIQLPLIPLIKANLIQVKNIIIDSKSGVSGAGRGAKEANLYTEIAEGIHSYG...
XP_057800821.1
MGSLAALHSISSVRGCLIKYQDEIKNSTVKKLSVRASVATSTPQNFQVEENKANILEKFRIGVLGASGYTGSEIIKLLANHPNYQIKLMTADRKAGQSIGSVFPHLVKQDLPNMVAVKDADFSNVDAVFCCLPHGTTQEIIKSLPSSLKIVDLSADFRLRNVNEYEEWYGQPHRAQELQKEAVYGLTEISRPEIQNARLVANPGCYPTSIQLPLIPLIKANLIQVKNIIIDSKSGVSGAGRGAKEANLYTEIAEGIHSYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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