当前解析结果
SmilChr03G003074| 统一新 Gene ID | SmilChr03G003074 |
|---|---|
| 名称 | SmilChr03G003074 |
| 描述 | general transcription and DNA repair factor IIH helicase subunit XPD |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47770895 - 47776515 / - |
| NCBI Gene ID | LOC131016219 |
|---|---|
| GeneID | 131016219 |
| locus_tag | - |
| NCBI Name | LOC131016219 |
| 原始查询 | LOC131016219 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | general transcription and DNA repair factor IIH helicase subunit XPD |
| 产物 | general transcription and DNA repair factor IIH helicase subunit XPD |
| Arabidopsis | AT1G03190 (UVH6)RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:839557] identity=84; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0144800 (OsXPD)- identity=80; qcov=1; evalue=0; confidence=high |
| GO | GO:0000717 (GO:0000717); GO:0003678 (DNA helicase activity); GO:0003684 (damaged DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006289 (nucleotide-excision repair); GO:0006366 (transcription by RNA polymerase II); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:0045951 (positive regulation of mitotic recombination) |
| KEGG | smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06733 (DEAD_2); PF06777 (HBB); PF13307 (Helicase_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016219 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800842.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057800842.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057800842.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057800842.1 |
| 5 | Midbody | Midbody | 0.40000 | XP_057800842.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47771249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C53 |
Chr3:47772657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:47772904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr3:47773294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,B76,C47 |
Chr3:47773295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,A6,B11,B89 |
Chr3:47774093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,B20,B77,C44,C9 |
Chr3:47775130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C53 |
Chr3:47775677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:47775770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:47775786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr3:47775814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,D1 |
Chr3:47775978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B19,B85,B97,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800842.1PF06733
DEAD_2 72-256 aa
PF06777
HBB 270-413 aa
PF13307
Helicase_C_2 524-697 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800842.1 |
Pfam | PF06733 |
DEAD_2 | Family | 72 | 256 | 5.3e-52 | 176.6 | DEAD_2 |
XP_057800842.1 |
Pfam | PF06777 |
HBB | Domain | 270 | 413 | 5.5e-41 | 140.6 | Helical and beta-bridge domain |
XP_057800842.1 |
Pfam | PF13307 |
Helicase_C_2 | Domain | 524 | 697 | 1.7e-38 | 133.0 | Helicase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。