Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003075

染色体: Chr03 坐标: 47777344-47779947 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003075
名称SmilChr03G003075
描述uncharacterized SmilChr03G003075
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向47777344 - 47779947 / -

ID 对照

NCBI Gene IDLOC131016220
GeneID131016220
locus_tag-
NCBI NameLOC131016220
原始查询LOC131016220

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述non-structural protein [Source:NCBI gene (formerly Entrezgene);Acc:839560]; symbol=AT1G03180; hit=AT1G03180; species=arabidopsis; confidence=high
产物non-structural protein [Source:NCBI gene (formerly Entrezgene);Acc:839560]; symbol=AT1G03180; hit=AT1G03180; species=arabidopsis; confidence=high
ArabidopsisAT1G03180 (AT1G03180)
non-structural protein [Source:NCBI gene (formerly Entrezgene);Acc:839560]
identity=53; qcov=0.989; evalue=3.2e-94; confidence=high
RiceOs05g0251400 (OsBVF1)
-
identity=40.7; qcov=0.963; evalue=3.22e-65; confidence=medium
GOGO:0005634 (nucleus); GO:0007096 (regulation of exit from mitosis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016220

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057800843.1
2 Nucleus membrane 核膜 0.20000 XP_057800843.1
3 Cytosol 细胞质基质 0.20000 XP_057800843.1
4 Chromosome 染色体 0.00000 XP_057800843.1
5 Centromere 着丝粒 0.00000 XP_057800843.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:47777719 G A EMS_canonical_SNV CDS_variant 5 A4,B125,B140,B2,B85
Chr3:47779175 G A EMS_canonical_SNV CDS_variant 3 B22,B23,C71
Chr3:47779547 C T EMS_canonical_SNV CDS_variant 4 B106,B14,B19,C78
Chr3:47779551 C T EMS_canonical_SNV CDS_variant 1 B97
Chr3:47779556 TG * 1bp_deletion CDS_variant 5 A8,B56,C11,C12,C65
Chr3:47779665 C T EMS_canonical_SNV CDS_variant 2 D10,D11
Chr3:47779723 C T EMS_canonical_SNV CDS_variant 2 B51,C70
Chr3:47779737 G A EMS_canonical_SNV CDS_variant 5 B110,B37,B38,C39,C78
Chr3:47779748 C T EMS_canonical_SNV CDS_variant 2 B51,C70
Chr3:47779773 G A EMS_canonical_SNV CDS_variant 3 B68,B88,C45

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057944860.1
ATGAATAGAATTACCCAAAATAAAAAGGGGAGTTTGGAAAGAAAAAAGATTGCGCCCGCCCTCATGAATTTCGAAAAATAGCAGAAACAAAACTCAAAGCCCCTTCTTCTCCATTCAATTCGCCGTTGATTCTGCGATTTAATTTTCCGTCGCGATGGAAGAAGGCGGAGGAAGCTCGGAAATGGAGTACACTAACATCGACGCTGCCTCCGACGCTCTCGACTGCTCCACCATTTTCCACCTCGCCTCCGACATCGTCG...

CDS

1 records

下载 CDS FASTA
LOC131016220
ATGGAAGAAGGCGGAGGAAGCTCGGAAATGGAGTACACTAACATCGACGCTGCCTCCGACGCTCTCGACTGCTCCACCATTTTCCACCTCGCCTCCGACATCGTCGGTTTCATTCTCTTCATGCACCAGCAGATCCCCTCATTACTCCAGGACATCACGCTCGAATTCGATGAACTACGGTCCGAATTCAAGGAATTGGAAATTGAGCTCTCGGAAAGTGAACCGAAGGCTCCATTGATAAGGAGAAAGCTAGCTGCCCG...

Protein

1 records

下载 Protein FASTA
XP_057800843.1
MEEGGGSSEMEYTNIDAASDALDCSTIFHLASDIVGFILFMHQQIPSLLQDITLEFDELRSEFKELEIELSESEPKAPLIRRKLAARKREVKMGIRRLEKLMGCISNLKAALQLLIAEVPNVDKISLVLGPSPLRPLHIYELSFSNGRPFLEDFSRSKTAETLSRKAIRMMISKGVGSDSYAGPTKLFLLVKAPSYLNLPLHFLPKREFRPNRKSKPFRLRFRCRTHNLEMNPRRNDCASSVEVQHSPSPDLIWFQCRHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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