Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003079`

染色体: Chr03 坐标: 47812784-47818038 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003079`
名称	SmilChr03G003079
描述	uncharacterized SmilChr03G003079
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47812784 - 47818038 / `-`

ID 对照

NCBI Gene ID	`LOC131016223`
GeneID	`131016223`
locus_tag	`-`
NCBI Name	`LOC131016223`
原始查询	`LOC131016223`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828164]; symbol=AT4G02830; hit=AT4G02830; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828164]; symbol=AT4G02830; hit=AT4G02830; species=arabidopsis; confidence=low
Arabidopsis	`AT4G02830` (AT4G02830) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828164] identity=40.8; qcov=0.698; evalue=1.73e-15; confidence=low
Rice	`Os01g0850000` - identity=48.7; qcov=0.453; evalue=5.85e-13; confidence=low
GO	-
KEGG	-
Pfam	PF27723 (UCP022260)
InterPro	-
eggNOG	-
NR	GeneID:131016223

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800845.1`
2	Cytoplasm	细胞质	1.00000	`XP_057800847.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057800847.1`
4	P-body	P-body	0.20000	`XP_057800845.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057800847.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47815192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B21,C28,C74
`Chr3:47815218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B111,B17
`Chr3:47815241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr3:47815245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B7,C3
`Chr3:47817749`	`T`	`TCC`	2bp_insertion	frameshift_variant	5	A1,B2,B83,B97,C59
`Chr3:47817749`	`T`	`TCC`	2bp_insertion	CDS_variant	5	A1,B2,B83,B97,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800845.1

181 aa

181

UCP022260

PF27723 UCP022260 37-143 aa

XP_057800846.1

180 aa

180

UCP022260

PF27723 UCP022260 50-142 aa

XP_057800847.1

173 aa

173

UCP022260

PF27723 UCP022260 37-140 aa

XP_057800848.1

172 aa

172

UCP022260

PF27723 UCP022260 50-139 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800845.1`	Pfam	`PF27723`	UCP022260	Family	37	143	2.5e-19	70.3	Uncharacterised conserved protein UCP022260
`XP_057800846.1`	Pfam	`PF27723`	UCP022260	Family	50	142	3.7e-19	69.7	Uncharacterised conserved protein UCP022260
`XP_057800847.1`	Pfam	`PF27723`	UCP022260	Family	37	140	6.8e-18	65.6	Uncharacterised conserved protein UCP022260
`XP_057800848.1`	Pfam	`PF27723`	UCP022260	Family	50	139	1e-17	65.0	Uncharacterised conserved protein UCP022260

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057944863.1
AACTAATGATGGCAAATTAAATCCACATTTACCTCTTTAAATATAACATAATCCCCACCCCACCCCACCCATTCACGTAATATATAAGTAGTTATATTGTAGGTTTGAAGTTGGAAGTGTACAATACATCTCCTCAAAACTCAGTTTGCTCAACAACAAATCACTCACCCTCACTTTCTCTCTCTAGATTCTTCAAATATCTGGTGCAGCATGGCGCAGAATCATTGCGATGTACTCGAAAATGGAGCACACCCTTGGCT...

XM_057944865.1
ATTCACGTAATATATAAGTAGTTATATTGTAGGTTTGAAGTTGGAAGTGTACAATACATCTCCTCAAAACTCAGTTTGCTCAACAACAAATCACTCACCCTCACTTTCTCTCTCTAGATTCTTCAAATATCTGGTGCAGCATGGCGCAGAATCATTGCGATGTACTCGAAAATGGAGCACACCCTTGGCTGCTTCAAGGGCATGCACGGATCACCCACGATCACAGTCACAGACCCGCTAAGGAGCGCTCTGCTGGATTC...

CDS

4 records

下载 CDS FASTA

LOC131016223
ATGGCGCAGAATCATTGCGATGTACTCGAAAATGGAGCACACCCTTGGCTGCTTCAAGGGCATGCACGGATCACCCACGATCACAGTCACAGACCCGCTAAGGAGCGCTCTGCTGGATTCGAAGCGTACGGGATAAAATCTCAGTCTTTTTTGGAGATGAACCCTGCCGTCGTGGTTCAAGGGCAAACGAGATCGGGCCAAAGAGCAAAGAATCATTCGAATTGGGCCAAAAGTGGGCCCGGAATGCAGGCTGTTTTTTT...

Protein

4 records

下载 Protein FASTA

XP_057800845.1
MAQNHCDVLENGAHPWLLQGHARITHDHSHRPAKQERSAGFEAYGIKSQSFLEMNPAVVVQGQTRSGQRAKNHSNWAKSGPGMQAVFLGPKRKSCGTGVFIPRRHATDLQFTNKPAFSPVLLPSRVIQALNLNVHELGQEIKPHSEQTKNVAEKIDEDLEKQKEDYVSLSPEIFLPKEWTY

XP_057800846.1
MAQNHCDVLENGAHPWLLQGHARITHDHSHRPAKERSAGFEAYGIKSQSFLEMNPAVVVQGQTRSGQRAKNHSNWAKSGPGMQAVFLGPKRKSCGTGVFIPRRHATDLQFTNKPAFSPVLLPSRVIQALNLNVHELGQEIKPHSEQTKNVAEKIDEDLEKQKEDYVSLSPEIFLPKEWTY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器