Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003092`

染色体: Chr03 坐标: 47936023-47938666 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003092`
名称	SmilChr03G003092
描述	cyclin-P3-1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47936023 - 47938666 / `+`

ID 对照

NCBI Gene ID	`LOC131016235`
GeneID	`131016235`
locus_tag	`-`
NCBI Name	`LOC131016235`
原始查询	`LOC131016235`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-P3-1
产物	cyclin-P3-1
Arabidopsis	`AT3G63120` (CYCP1;1) cyclin p1;1 [Source:NCBI gene (formerly Entrezgene);Acc:825487] identity=48.4; qcov=1.02; evalue=1.07e-60; confidence=high
Rice	`Os05g0398000` (CycU3) - identity=50.5; qcov=1.03; evalue=1.47e-73; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0019901 (protein kinase binding)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF08613 (Cyclin)
InterPro	-
eggNOG	-
NR	GeneID:131016235

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800871.1`
2	Cytoplasm	细胞质	0.20000	`XP_057800871.1`
3	Chromosome	染色体	0.00000	`XP_057800871.1`
4	Centromere	着丝粒	0.00000	`XP_057800871.1`
5	Chromatin	染色质	0.00000	`XP_057800871.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47937722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr3:47937758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:47937875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C53
`Chr3:47938047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:47938330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800871.1

217 aa

108

217

Cyclin

Cyclin_N

PF08613 Cyclin 49-167 aa PF00134 Cyclin_N 75-167 aa

XP_057800872.1

217 aa

108

217

Cyclin

Cyclin_N

PF08613 Cyclin 49-167 aa PF00134 Cyclin_N 75-167 aa

XP_057800873.1

217 aa

108

217

Cyclin

Cyclin_N

PF08613 Cyclin 49-167 aa PF00134 Cyclin_N 75-167 aa

XP_057800874.1

217 aa

108

217

Cyclin

Cyclin_N

PF08613 Cyclin 49-167 aa PF00134 Cyclin_N 75-167 aa

XP_057800875.1

217 aa

108

217

Cyclin

Cyclin_N

PF08613 Cyclin 49-167 aa PF00134 Cyclin_N 75-167 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800871.1`	Pfam	`PF08613`	Cyclin	Family	49	167	1.8e-37	129.8	Cyclin
`XP_057800871.1`	Pfam	`PF00134`	Cyclin_N	Domain	75	167	3.2e-11	43.7	Cyclin, N-terminal domain
`XP_057800872.1`	Pfam	`PF08613`	Cyclin	Family	49	167	1.8e-37	129.8	Cyclin
`XP_057800872.1`	Pfam	`PF00134`	Cyclin_N	Domain	75	167	3.2e-11	43.7	Cyclin, N-terminal domain
`XP_057800873.1`	Pfam	`PF08613`	Cyclin	Family	49	167	1.8e-37	129.8	Cyclin
`XP_057800873.1`	Pfam	`PF00134`	Cyclin_N	Domain	75	167	3.2e-11	43.7	Cyclin, N-terminal domain
`XP_057800874.1`	Pfam	`PF08613`	Cyclin	Family	49	167	1.8e-37	129.8	Cyclin
`XP_057800874.1`	Pfam	`PF00134`	Cyclin_N	Domain	75	167	3.2e-11	43.7	Cyclin, N-terminal domain
`XP_057800875.1`	Pfam	`PF08613`	Cyclin	Family	49	167	1.8e-37	129.8	Cyclin
`XP_057800875.1`	Pfam	`PF00134`	Cyclin_N	Domain	75	167	3.2e-11	43.7	Cyclin, N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057944888.1
ACCCAGATGTAATATGGAGGCAAATGAGACTGTGTGATGTGAGACGCAGCGGCTACCGACGCTGCCTTCCATGAATCATGATCCCACATTCCTCTCTCTCTCTCACACACAAAAACTCATGTGTAGGTGAGAGAGAATTTTCATGTGGAGGGGACATACATTTATTTAATAGAAAAAGAACAATATTTTGCACTAGCATTTATACCCCCTAAAGAAAGTGAAATTAGTGTCCAGCGAGATAATGGTGTATGAGCGAGAAT...

XM_057944889.1
ACGCAGCGGCTACCGACGCTGCCTTCCATGAATCATGATCCCACATTCCTCTCTCTCTCTCACACACAAAAACTCATGTGTAGGTGAGAGAGAATTTTCATGTGGAGGGGACATACATTTATTTAATAGAAAAAGAACAATATTTTGCACTAGCATTTATACCCCCTAAAGAAAGTGAAATTAGTGTCCAGCGAGATAATGGTGTATGAGCGAGAATGGGTTTTTGGTTTTCCATGTGAAAAAAAGGAAAAGTGGTGCAC...

CDS

5 records

下载 CDS FASTA

LOC131016235
ATGGGAACTTTGGCCCTCGAAACCAGTGGTGCGTGCTCGAGTGACTACATAGCGTTGGGGCTGAAGGACTTCAGAAAAGGCAGTATAGAAAAGCCCCAGATTCTCTCACTTTTATCGACATTGCTAGAGAGGTCCGTCCATAAAAACGAAAGGAGGCTAGAAACTTTACAAACTAAAGACTTCATCACAATATTCCACGGTTTAAGAGCGCCTTCTCTCAGCATTCAACAATACATAGATCGGATTTTTAAGTATTCATG...

Protein

5 records

下载 Protein FASTA

XP_057800871.1
MGTLALETSGACSSDYIALGLKDFRKGSIEKPQILSLLSTLLERSVHKNERRLETLQTKDFITIFHGLRAPSLSIQQYIDRIFKYSCCSSSCFVVAYIYMDRFIEQTKSLLTSLNIHRLTITSVMLAAKFMDDAFYNNAYYARVGGVSTAEMNKLEMKFLFSLDFRLHVNVQTFGKYCSILKREAKGTLVERPIQACGVEESWTNKDDSTCARPVAR

XP_057800872.1
MGTLALETSGACSSDYIALGLKDFRKGSIEKPQILSLLSTLLERSVHKNERRLETLQTKDFITIFHGLRAPSLSIQQYIDRIFKYSCCSSSCFVVAYIYMDRFIEQTKSLLTSLNIHRLTITSVMLAAKFMDDAFYNNAYYARVGGVSTAEMNKLEMKFLFSLDFRLHVNVQTFGKYCSILKREAKGTLVERPIQACGVEESWTNKDDSTCARPVAR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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