Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000326`

染色体: Chr01 坐标: 6559594-6564497 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000326`
名称	SmilChr01G000326
描述	GDP-mannose transporter GONST1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	6559594 - 6564497 / `-`

ID 对照

NCBI Gene ID	`LOC131016326`
GeneID	`131016326`
locus_tag	`-`
NCBI Name	`LOC131016326`
原始查询	`LOC131016326`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GDP-mannose transporter GONST1-like
产物	GDP-mannose transporter GONST1-like
Arabidopsis	`AT2G13650` (GONST1) golgi nucleotide sugar transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:815850] identity=83.5; qcov=1; evalue=1.6e-119; confidence=high
Rice	`Os03g0826300` - identity=64.9; qcov=0.995; evalue=2.16e-97; confidence=high
GO	GO:0005458 (GDP-mannose transmembrane transporter activity); GO:0005794 (Golgi apparatus); GO:0015297 (antiporter activity)
KEGG	-
Pfam	PF03151 (TPT)
InterPro	-
eggNOG	-
NR	GeneID:131016326

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057800999.1`
2	Trans-golgi network	Trans-golgi network	0.20000	`XP_057800999.1`
3	Vesicle	囊泡	0.20000	`XP_057801007.1`
4	Nucleus	细胞核	0.00000	`XP_057801029.1`
5	Chromosome	染色体	0.00000	`XP_057801029.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:6559775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,D7
`Chr1:6559779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B105,C21,C73,C86
`Chr1:6559800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,C71
`Chr1:6559952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B2,C25
`Chr1:6559954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B3,C24,C46
`Chr1:6559964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,B55
`Chr1:6560631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:6560834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B54,C1
`Chr1:6561701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:6561798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B13,B4
`Chr1:6562223`	`T`	`TGA`	2bp_insertion	frameshift_variant	5	A1,B105,C21,C73,C86
`Chr1:6562223`	`T`	`TGA`	2bp_insertion	CDS_variant	5	A1,B105,C21,C73,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800999.1

404 aa

202

404

TPT

PF03151 TPT 72-349 aa

XP_057801007.1

368 aa

184

368

TPT

PF03151 TPT 72-353 aa

XP_057801015.1

368 aa

184

368

TPT

PF03151 TPT 72-353 aa

XP_057801019.1

368 aa

184

368

TPT

PF03151 TPT 72-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800999.1`	Pfam	`PF03151`	TPT	Family	72	349	5.5e-12	46.4	Triose-phosphate Transporter family
`XP_057801007.1`	Pfam	`PF03151`	TPT	Family	72	353	3.7e-12	47.0	Triose-phosphate Transporter family
`XP_057801015.1`	Pfam	`PF03151`	TPT	Family	72	353	3.7e-12	47.0	Triose-phosphate Transporter family
`XP_057801019.1`	Pfam	`PF03151`	TPT	Family	72	353	3.7e-12	47.0	Triose-phosphate Transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057945032.1
GGGAATCTGATTTCCCTCCATCCCACCACCACCTCCCCTAAAACAAGGAAAGTTATTTAACACACGCACTCTGTGTAGGAGAATGAAGTTCTCATTTTTAAATAAAGTTTGACTGCACTCAACTTCAAATTCACATAAAGTAGTTCCCCCGGGAAGATTCGAATGCTGATTCACACTTACTCCTCTGTGTTTAAGTAGTAAATGAATCCTATGTAACTCTCTCTCTCTCTCTTGCTCTGTCTTCCGTCGTGTAAGCTGAT...

XM_057945016.1
GGGAATCTGATTTCCCTCCATCCCACCACCACCTCCCCTAAAACAAGGAAAGTTATTTAACACACGCACTCTGTGTAGGAGAATGAAGTTCTCATTTTTAAATAAAGTTTGACTGCACTCAACTTCAAATTCACATAAAGTAGTTCCCCCGGGAAGATTCGAATGCTGATTCACACTTACTCCTCTGTGTTTAAGTAGTAAATGAATCCTATGTAACTCTCTCTCTCTCTCTTGCTCTGTCTTCCGTCGTGTAAGCTGAT...

CDS

5 records

下载 CDS FASTA

LOC131016326
ATGGAATCCCCACGCGAAGAAAGAGGCATCACAAATCATCACCTAAATGGCTCTGTAGATCAGGTCTCAAGTCCGATTAGTAGAGCAATAGCCAGCAGATCTACTTTAGGGGTGAAGGCTAACGAGGAGATTGACGTGGAAGATGGGAGGTTCGGAAAAGATAGAGAGAAAGGACTGCAAAGTAGAAGAAGGCCAGCATTACACAACCAGGCGTTGCTATCTGGCCTCGCATACTGTCTCTCTTCGTGCGGGATGATACT...

Protein

5 records

下载 Protein FASTA

XP_057800999.1
MESPREERGITNHHLNGSVDQVSSPISRAIASRSTLGVKANEEIDVEDGRFGKDREKGLQSRRRPALHNQALLSGLAYCLSSCGMILVNKYVLSSYDFNAGISLMLYQNFVAVVVVSGLSFLGVITTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGFTDLSFHVTGYTWQFINCFLTASYSLTLRRLMDTAKQVTKSGDLNEFSMVMLNN...

XP_057801007.1
MESPREERGITNHHLNGSVDQVSSPISRAIASRSTLGVKANEEIDVEDGRFGKDREKGLQSRRRPALHNQALLSGLAYCLSSCGMILVNKYVLSSYDFNAGISLMLYQNFVAVVVVSGLSFLGVITTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGFTDLSFHVTGYTWQFINCFLTASYSLTLRRLMDTAKQVTKSGDLNEFSMVMLNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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