Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003189

染色体: Chr03 坐标: 49354509-49356288 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003189
名称SmilChr03G003189
描述heat stress transcription factor A-7a-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向49354509 - 49356288 / +

ID 对照

NCBI Gene IDLOC131016328
GeneID131016328
locus_tag-
NCBI NameLOC131016328
原始查询LOC131016328

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heat stress transcription factor A-7a-like
产物heat stress transcription factor A-7a-like
ArabidopsisAT3G22830 (HSFA6B)
heat shock transcription factor A6B [Source:NCBI gene (formerly Entrezgene);Acc:821854]
identity=47.2; qcov=1.17; evalue=3.03e-65; confidence=high
RiceOs07g0178600 (HSFA2B)
-
identity=47.5; qcov=1.06; evalue=4.43e-66; confidence=high
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG-
PfamPF00447 (HSF_DNA-bind)
InterPro-
eggNOG-
NRGeneID:131016328

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057800997.1
2 Chromosome 染色体 0.00000 XP_057800997.1
3 Centromere 着丝粒 0.00000 XP_057800997.1
4 Chromatin 染色质 0.00000 XP_057800997.1
5 Telomere 端粒 0.00000 XP_057800997.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057800997.1
332 aa
N
1
166
332
HSF_DNA-bind
C
PF00447 HSF_DNA-bind 38-127 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800997.1 Pfam PF00447 HSF_DNA-bind Domain 38 127 5.2e-31 107.9 HSF-type DNA-binding

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057945014.1
AAAACTTTCCTTCCATTCTAGAACGTTCCACGATAAATATCTCCCCCCCTATATAAACAAAGAGCATCTTCTTTCTGTTCACACTCAATCTCTGAACTCCAGCGTCTTCAACGGTTTCCAAAACCAGCAAAACATCTCAACTAAAAGTCTCTTCTCTGTCTCCTTCCTTAATCGGAAATTCATGTCCGCTGCGAGGATTCTTCATTCCTCTGCTTTTCTTCAACTGGTCAATCACATTTCGCAATCGCAGCAATCTAATC...
XM_057945015.1
GTCGTGTGGGATCCTCACGCCTTCTCCACCACTGTGCTGCCCCGATATTTTAAGCACAATAATTTCTCCAGCTTCGTCAGACAGCTCAATACTTATGTTCAACAATGTTGATGACAAACAATGTACAAGATGATGAAGGGATTTAGAAAAATCGATACAGACAAGTGGGAGTTCGCGAACGAGGCATTTCTGAGAGGCCAGAAGCATCTATTAAAGAACATCAGGCGAAGAAAAACGAGCCCCCCTCAGCTCCCCCCGGC...

CDS

2 records

下载 CDS FASTA
LOC131016328
ATGTTTCCGGTGAAGGATGAATATCAAGGAGCATCGAGCTCGTGGCCGGAATCGAGCGATCAGGCGGCGCCGCAGCCGATGGACGGGCTGCACGAAATGGGGCCGCCGCCGTTCCTGACGAAGACGTTCGACGTGGTAGAGGATTCGAGCACCGACGACGTCGTTTCCTGGAGCAGAGGAGGTCACAGTTTTGTCGTGTGGGATCCTCACGCCTTCTCCACCACTGTGCTGCCCCGATATTTTAAGCACAATAATTTCTC...
LOC131016328
ATGTACAAGATGATGAAGGGATTTAGAAAAATCGATACAGACAAGTGGGAGTTCGCGAACGAGGCATTTCTGAGAGGCCAGAAGCATCTATTAAAGAACATCAGGCGAAGAAAAACGAGCCCCCCTCAGCTCCCCCCGGCCCAGCAGGCCGCCCCCTTCATCGAGCTAGGCAACTTCGGCCGCGACGCCGAAGTGGACGGCTTGCGGCGGGACAAGCTTGTCCTAGTAACGGAGCTGGTGAAGCTCAGGCAGCAGCAGCA...

Protein

2 records

下载 Protein FASTA
XP_057800997.1
MFPVKDEYQGASSSWPESSDQAAPQPMDGLHEMGPPPFLTKTFDVVEDSSTDDVVSWSRGGHSFVVWDPHAFSTTVLPRYFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGQKHLLKNIRRRKTSPPQLPPAQQAAPFIELGNFGRDAEVDGLRRDKLVLVTELVKLRQQQQVTRAHLQQMEQRLQSTETKQQQMMSFLARAMQNPEFIHQLVHHKEKRKELEEAISKKRRRPIEAAESSRVKAEPLELWGSQAS...
XP_057800998.1
MYKMMKGFRKIDTDKWEFANEAFLRGQKHLLKNIRRRKTSPPQLPPAQQAAPFIELGNFGRDAEVDGLRRDKLVLVTELVKLRQQQQVTRAHLQQMEQRLQSTETKQQQMMSFLARAMQNPEFIHQLVHHKEKRKELEEAISKKRRRPIEAAESSRVKAEPLELWGSQASELEVLAMEMQGFGKGKAEAEVEADEVDNELDDGFWEELLSEGFDQEVGCDESEGKDVNGLAHRLGFLASRWR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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