Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003203`

染色体: Chr03 坐标: 49579324-49582069 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003203`
名称	SmilChr03G003203
描述	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	49579324 - 49582069 / `-`

ID 对照

NCBI Gene ID	`LOC131016348`
GeneID	`131016348`
locus_tag	`-`
NCBI Name	`LOC131016348`
原始查询	`LOC131016348`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
产物	2-methyl-6-phytyl-1%2C4-hydroquinone methyltransferase%2C chloroplastic
Arabidopsis	`AT3G63410` (APG1) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825516] identity=73.6; qcov=1.03; evalue=4.05e-179; confidence=high
Rice	`Os07g0179300` (OsVTE3) - identity=76.3; qcov=0.939; evalue=6.23e-178; confidence=high
GO	GO:0032259 (methylation); GO:0051741 (2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131016348

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801028.1`
2	Chloroplast thylakoid	类囊体	0.80000	`XP_057801028.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057801028.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057801028.1`
5	Nucleus	细胞核	0.00000	`XP_057801028.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:49579840`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B139
`Chr3:49579840`	`CG`	`C`	1bp_deletion	CDS_variant	1	B139
`Chr3:49580609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:49580653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C83,D10
`Chr3:49580665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:49581436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr3:49581727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B104,B9,C61,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801028.1

346 aa

173

346

Ubie_methyltran

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF01209 Ubie_methyltran 117-220 aa PF13847 Methyltransf_31 118-221 aa PF13649 Methyltransf_25 123-215 aa PF08242 Methyltransf_12 124-216 aa PF08241 Methyltransf_11 124-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801028.1`	Pfam	`PF01209`	Ubie_methyltran	Family	117	220	8.4e-16	58.7	ubiE/COQ5 methyltransferase family
`XP_057801028.1`	Pfam	`PF13847`	Methyltransf_31	Domain	118	221	4.5e-12	46.7	Methyltransferase domain
`XP_057801028.1`	Pfam	`PF13649`	Methyltransf_25	Domain	123	215	5.4e-18	66.2	Methyltransferase domain
`XP_057801028.1`	Pfam	`PF08242`	Methyltransf_12	Domain	124	216	8.8e-11	43.1	Methyltransferase domain
`XP_057801028.1`	Pfam	`PF08241`	Methyltransf_11	Domain	124	218	3.5e-20	73.1	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945045.1
GGCAATAATTTTGTTTTGTTTGGGAAAGAAAAATGAAAAATGAAAAATGTTGTGGCTACTATATCACTTCCACCAGTGTAGTTGCTGCCCGCGCGTCTGCCTCCACAGAAACTCTCTTCTTCTTCTCCACATTCTTTGTCGCTTCCATTTTTGCCCCATTTCTGTTTCCACGATTAGCTAATCAATCTCCATAGCTGAATCCCTTCAGCTCGCAGTTCGCTTCTTCTATGGCTTCCGCGATGCTCAACGGCGCCGAAAAC...

CDS

1 records

下载 CDS FASTA

LOC131016348
ATGGCTTCCGCGATGCTCAACGGCGCCGAAAACCTCACTCTCATCCGAGCAATCGCCCCAAACCCCAAAGGATTAGGTTTTCTCAGCTCTGATTTCCGCGGCAAAAACTTCCCCACTCTCACCCCAATCTCGCGCGGCAACATTTCAATTCGAACAGCAAGGAGCCGAACCCTCACCCCAAAATGCAGCATCTCAGCTCCCAGGCCGGCGTCGCAGCCGAGATTCATACAGCACAAGAAGGAGGCATTTTGGTTCTACAG...

Protein

1 records

下载 Protein FASTA

XP_057801028.1
MASAMLNGAENLTLIRAIAPNPKGLGFLSSDFRGKNFPTLTPISRGNISIRTARSRTLTPKCSISAPRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNHRDLTVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKARQKEPLKDCKILEGDAEDLPFPTDSVDRYVSAGSIEYWPDPQRGIKEAYRVLRLGGKACLIGPVYPTFWLSRFFADAWMLFPKEEEYIEWFEKAGFKNVQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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