Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003238`

染色体: Chr03 坐标: 50282916-50286115 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003238`
名称	SmilChr03G003238
描述	uncharacterized SmilChr03G003238
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50282916 - 50286115 / `+`

ID 对照

NCBI Gene ID	`LOC131016379`
GeneID	`131016379`
locus_tag	`-`
NCBI Name	`LOC131016379`
原始查询	`LOC131016379`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=33.2; qcov=0.982; evalue=9.08e-60; confidence=low
Rice	`Os05g0103600` - identity=34.4; qcov=0.972; evalue=3.06e-59; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:131016379

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057801051.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801051.1`
3	Cytosol	细胞质基质	0.60000	`XP_057801051.1`
4	Chromosome	染色体	0.00000	`XP_057801051.1`
5	Centromere	着丝粒	0.00000	`XP_057801051.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50283189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B44,B47,C12,C14
`Chr3:50283195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr3:50283286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B12,B66,B8,D9
`Chr3:50283458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B44
`Chr3:50283460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B44
`Chr3:50283762`	`G`	`GTC`	2bp_insertion	frameshift_variant	28	A15,A20,A6,B118,B13,B136,B14,B2,B30,B35,B36,B44,B45,B48,B56,B70,B75,B87,B90,B92,C10,C22,C58,C6,C71,C75,C86,D10
`Chr3:50283794`	`AT`	`A`	1bp_deletion	frameshift_variant	26	A15,A6,A9,B118,B13,B133,B136,B14,B30,B34,B35,B36,B44,B45,B48,B53,B56,B75,B92,C10,C22,C58,C6,C71,C75,D10
`Chr3:50283803`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	C22
`Chr3:50283803`	`CTT`	`C`	2bp_deletion	CDS_variant	1	C22
`Chr3:50283823`	`TC`	`T`	1bp_deletion	frameshift_variant	52	A10,A16,A20,A24,A3,B100,B107,B111,B117,B124,B127,B131,B17,B35,B37,B43,B48,B49,B54,B60,B64,B67,B70,B71,B76,B79,B80,B84,B91,C12,C16,C17,C22,C24,C28,C33,C34,C45,C48,C49,C55,C59,C60,C71,C75,C77,C78,C79,D10,D11,D4,D6
`Chr3:50283828`	`A`	`AG`	1bp_insertion	frameshift_variant	53	A10,A16,A20,A24,A3,B100,B107,B111,B113,B117,B12,B124,B127,B131,B17,B35,B37,B43,B48,B53,B54,B60,B64,B67,B70,B71,B76,B79,B80,B84,B90,B91,C12,C16,C17,C21,C22,C24,C33,C34,C45,C48,C55,C60,C71,C77,C78,C79,C80,D10,D11,D4,D6
`Chr3:50283835`	`ACT`	`A`	2bp_deletion	frameshift_variant	27	A10,A16,A20,B102,B117,B124,B35,B37,B43,B53,B54,B60,B71,B76,B79,B80,B91,C16,C22,C24,C34,C48,C59,C79,C80,D11,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801051.1

436 aa

218

436

Ank_2

Ank

Ank_3

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_3

Ank_2

Ank_3

Ank

PF12796 Ank_2 13-111 aa PF00023 Ank 49-73 aa PF13606 Ank_3 49-77 aa PF12796 Ank_2 82-137 aa PF00023 Ank 84-113 aa PF13637 Ank_4 87-136 aa PF12796 Ank_2 111-175 aa PF00023 Ank 116-142 aa PF13606 Ank_3 116-142 aa PF12796 Ank_2 148-209 aa PF13606 Ank_3 150-175 aa PF00023 Ank 150-176 aa PF00023 Ank 215-241 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801051.1`	Pfam	`PF12796`	Ank_2	Repeat	13	111	2.9e-47	159.9	Ankyrin repeats (3 copies)
`XP_057801051.1`	Pfam	`PF00023`	Ank	Repeat	49	73	2.9e-35	119.0	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF13606`	Ank_3	Repeat	49	77	9e-29	96.7	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF12796`	Ank_2	Repeat	82	137	2.9e-47	159.9	Ankyrin repeats (3 copies)
`XP_057801051.1`	Pfam	`PF00023`	Ank	Repeat	84	113	2.9e-35	119.0	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF13637`	Ank_4	Repeat	87	136	1.8e-28	98.7	Ankyrin repeats (many copies)
`XP_057801051.1`	Pfam	`PF12796`	Ank_2	Repeat	111	175	2.9e-47	159.9	Ankyrin repeats (3 copies)
`XP_057801051.1`	Pfam	`PF00023`	Ank	Repeat	116	142	2.9e-35	119.0	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF13606`	Ank_3	Repeat	116	142	9e-29	96.7	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF12796`	Ank_2	Repeat	148	209	2.9e-47	159.9	Ankyrin repeats (3 copies)
`XP_057801051.1`	Pfam	`PF13606`	Ank_3	Repeat	150	175	9e-29	96.7	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF00023`	Ank	Repeat	150	176	2.9e-35	119.0	Ankyrin repeat
`XP_057801051.1`	Pfam	`PF00023`	Ank	Repeat	215	241	2.9e-35	119.0	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945068.1
ACGATCGTCTTCTTGTCTTCGGAGGGAGGTTAGGGCTTCTCATTTTGACAACTTTTCTTGATAGCTAACACTGTTTTTTGCTCATATTAAATTATTTGCAAAAATAAATGGCATTTTGCGCATCTGTTAGGATTAAACAAATTCAATATTCAATCCCCACCCTTTTTCTTCGCGCCTTCTTCTGTTCTATAAATAAACAGAAGCGGTTTAAATAGAACGAAGTTTGTCTCATATATTCAACAACTAACAACTTGAACGCC...

CDS

1 records

下载 CDS FASTA

LOC131016379
ATGGATTCTATCTCTGAAACTGGTGCACTGATTATCGAGGCTGCTGCTACTGGAGACCTTAAAAAACTTAAGGCGATCAGAAGGAAGGTTGGTGATGACACAGACTTCCGGAGAATATGTGATGAATATGGCGACTTCTCCACGGGCTGGACTGTCTTGCATCACGCTGCTGAAATCGGACATTTTGAGATTTGCAAATTCTTGATTCAGAACGTCCAAGTTTATATTGATGCCTCGACTTACCAGAGGGATACTCCTCT...

Protein

1 records

下载 Protein FASTA

XP_057801051.1
MDSISETGALIIEAAATGDLKKLKAIRRKVGDDTDFRRICDEYGDFSTGWTVLHHAAEIGHFEICKFLIQNVQVYIDASTYQRDTPLIKAAKGEHVKLAEYLVNRGASISKANSKGFTALHYAIIKDNRELMELLLLGNAAIEADSVEGTPLQCAASRGNVEAVKLLLSHGAKPDLCFLVMDPPLVCAIKSRSFQCMDALLKARADPNTYYIGVCPLSFAAKEGDTRFLKSLLEAGADPNSLFTGDVKPIEDAALVHNRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器