Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003242`

染色体: Chr03 坐标: 50312171-50317407 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003242`
名称	SmilChr03G003242
描述	uncharacterized SmilChr03G003242
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50312171 - 50317407 / `-`

ID 对照

NCBI Gene ID	`LOC131016382`
GeneID	`131016382`
locus_tag	`-`
NCBI Name	`LOC131016382`
原始查询	`LOC131016382`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=32.7; qcov=0.924; evalue=4.2e-61; confidence=low
Rice	`Os05g0103600` - identity=34.5; qcov=0.803; evalue=1.83e-60; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:131016382

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057801057.1`
2	Cytosol	细胞质基质	0.80000	`XP_057801057.1`
3	Nucleus	细胞核	0.40000	`XP_057801057.1`
4	Chromosome	染色体	0.00000	`XP_057801057.1`
5	Centromere	着丝粒	0.00000	`XP_057801057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50312436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,D11
`Chr3:50312988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr3:50313441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B46,C1,C78,C82
`Chr3:50313848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr3:50314938`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B106,D7
`Chr3:50314938`	`C`	`CA`	1bp_insertion	CDS_variant	2	B106,D7
`Chr3:50314943`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B106,D7
`Chr3:50314943`	`TC`	`T`	1bp_deletion	CDS_variant	2	B106,D7
`Chr3:50314948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B119,B135,B4,B97
`Chr3:50314965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,D7
`Chr3:50314976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,D7,D8
`Chr3:50315029`	`AGC`	`A`	2bp_deletion	frameshift_variant	2	C37,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801057.1

473 aa

236

473

Ank_2

Ank_3

Ank

Ank_4

Ank

Ank_2

Ank

Ank_3

Ank_4

Ank_3

Ank

Ank_2

Ank

PF12796 Ank_2 60-140 aa PF13606 Ank_3 78-101 aa PF00023 Ank 78-103 aa PF13637 Ank_4 82-132 aa PF00023 Ank 112-136 aa PF12796 Ank_2 141-205 aa PF00023 Ank 145-171 aa PF13606 Ank_3 145-171 aa PF13637 Ank_4 149-197 aa PF13606 Ank_3 179-204 aa PF00023 Ank 179-207 aa PF12796 Ank_2 215-296 aa PF00023 Ank 242-272 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801057.1`	Pfam	`PF12796`	Ank_2	Repeat	60	140	2.5e-37	128.0	Ankyrin repeats (3 copies)
`XP_057801057.1`	Pfam	`PF13606`	Ank_3	Repeat	78	101	5.9e-27	91.2	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF00023`	Ank	Repeat	78	103	4.6e-35	118.4	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF13637`	Ank_4	Repeat	82	132	5.8e-26	90.7	Ankyrin repeats (many copies)
`XP_057801057.1`	Pfam	`PF00023`	Ank	Repeat	112	136	4.6e-35	118.4	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF12796`	Ank_2	Repeat	141	205	2.5e-37	128.0	Ankyrin repeats (3 copies)
`XP_057801057.1`	Pfam	`PF00023`	Ank	Repeat	145	171	4.6e-35	118.4	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF13606`	Ank_3	Repeat	145	171	5.9e-27	91.2	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF13637`	Ank_4	Repeat	149	197	5.8e-26	90.7	Ankyrin repeats (many copies)
`XP_057801057.1`	Pfam	`PF13606`	Ank_3	Repeat	179	204	5.9e-27	91.2	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF00023`	Ank	Repeat	179	207	4.6e-35	118.4	Ankyrin repeat
`XP_057801057.1`	Pfam	`PF12796`	Ank_2	Repeat	215	296	2.5e-37	128.0	Ankyrin repeats (3 copies)
`XP_057801057.1`	Pfam	`PF00023`	Ank	Repeat	242	272	4.6e-35	118.4	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945074.1
TTGGCTCAAACTTACAAAAAATTTAACCCATTTCGTGGGCTAGTAATCAATTAGTGGCATTGGTGACCCAAATTTTAGTTGGTATACTTCTCAGCCCACAATTTCCCCTCTTTCGCCGGATGTTTAGCTCCGCCGCTCTTGCCAAAAAATTGAGGTGGGGCATCCCTGAGGGGCGGCTGCTGTTGCTCCGGCGATCATGATCGCGGAAAGGCGATGGGATTGCTCGCGGGAGTTCCTGCCACTTTGCGTTCGGGACCGGC...

CDS

1 records

下载 CDS FASTA

LOC131016382
ATGGCATCTCCTTCTGAATTTGCTAATCCAAGCTTGAATGACGAGGATTCTCCTCCTGAAATTGCTAATCTAAGCTTGAATGACAAGGATTCTCTTACTGAAATTGGCGCTCAGATTTTGAAGGCTGGGGCTAATGGAGACCTTGAAAAACTTAAGGAGATCAAACAGAGTTTTGGAGGTAATCTCAAAACCTTCAAGCTTATCTGTGATATATACAGTGACGTCTCTACGGGATGGAGAGTCTTGCATCTCGCGGCTTC...

Protein

1 records

下载 Protein FASTA

XP_057801057.1
MASPSEFANPSLNDEDSPPEIANLSLNDKDSLTEIGAQILKAGANGDLEKLKEIKQSFGGNLKTFKLICDIYSDVSTGWRVLHLAASMGNLEVCEFLVEHIGTFVDVPSFSGETPMILAAKGQHVQVVEYLIRKTALIQVSDHKGFTALHYAALGDNMALMELLLKNDAPLEIDSVDGTPLQIAASRGNVEAVKLLLEHGAEPNSITSVVASSPLIGAIKSRSLECMECLLEAKADPERFTYGLTPLAYAAKEADTKFLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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