Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000338

染色体: Chr01 坐标: 6930999-6934624 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000338
名称SmilChr01G000338
描述calcium-dependent protein kinase 14-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向6930999 - 6934624 / +

ID 对照

NCBI Gene IDLOC131016419
GeneID131016419
locus_tag-
NCBI NameLOC131016419
原始查询LOC131016419

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 14-like
产物calcium-dependent protein kinase 14-like
ArabidopsisAT5G12180 (CPK17)
calcium-dependent protein kinase 17 [Source:NCBI gene (formerly Entrezgene);Acc:831091]
identity=79; qcov=0.943; evalue=0; confidence=high
RiceOs01g0808400 (OsCDPK2)
-
identity=75.2; qcov=0.935; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131016419

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057801100.1
2 Cell membrane 细胞膜 1.00000 XP_057801100.1
3 Cytoplasm 细胞质 0.20000 XP_057801100.1
4 Nucleus 细胞核 0.00000 XP_057801100.1
5 Chromosome 染色体 0.00000 XP_057801100.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:6931059 C T EMS_canonical_SNV CDS_variant 1 B104
Chr1:6931208 G A EMS_canonical_SNV CDS_variant 1 B73
Chr1:6931255 C T EMS_canonical_SNV CDS_variant 2 B15,B74
Chr1:6931369 C T EMS_canonical_SNV CDS_variant 1 C49
Chr1:6931752 C T EMS_canonical_SNV CDS_variant 1 C61
Chr1:6931817 G A EMS_canonical_SNV CDS_variant 1 B48
Chr1:6931996 G A EMS_canonical_SNV CDS_variant 2 C49,C71
Chr1:6932083 C T EMS_canonical_SNV CDS_variant 4 A16,B2,B29,D11
Chr1:6932191 G A EMS_canonical_SNV CDS_variant 1 C27
Chr1:6932295 G A EMS_canonical_SNV CDS_variant 5 A1,B105,C21,C73,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801100.1
565 aa
N
1
282
565
Pkinase
PK_Tyr_Ser-Thr
EF-hand_8
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_1
EF-hand_5
EF-hand_7
EF-hand_8
EF-hand_6
EF-hand_5
EF-hand_1
EF-hand_8
EF-hand_1
EF-hand_5
C
PF00069 Pkinase 102-360 aa PF07714 PK_Tyr_Ser-Thr 104-356 aa PF13833 EF-hand_8 400-429 aa PF13202 EF-hand_5 408-430 aa PF00036 EF-hand_1 408-434 aa PF13405 EF-hand_6 408-435 aa PF13499 EF-hand_7 408-468 aa PF13833 EF-hand_8 436-467 aa PF00036 EF-hand_1 443-470 aa PF13202 EF-hand_5 445-465 aa PF13499 EF-hand_7 477-540 aa PF13833 EF-hand_8 478-503 aa PF13405 EF-hand_6 480-508 aa PF13202 EF-hand_5 482-502 aa PF00036 EF-hand_1 482-506 aa PF13833 EF-hand_8 495-541 aa PF00036 EF-hand_1 514-541 aa PF13202 EF-hand_5 521-539 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801100.1 Pfam PF00069 Pkinase Domain 102 360 1.3e-79 268.0 Protein kinase domain
XP_057801100.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 104 356 1.7e-29 103.6 Protein tyrosine and serine/threonine kinase
XP_057801100.1 Pfam PF13833 EF-hand_8 Domain 400 429 5.2e-20 71.6 EF-hand domain pair
XP_057801100.1 Pfam PF13202 EF-hand_5 Domain 408 430 9.1e-24 82.5 EF hand
XP_057801100.1 Pfam PF00036 EF-hand_1 Domain 408 434 9.8e-34 113.1 EF hand domain
XP_057801100.1 Pfam PF13405 EF-hand_6 Domain 408 435 3e-27 92.4 EF-hand domain
XP_057801100.1 Pfam PF13499 EF-hand_7 Domain 408 468 5.6e-35 120.2 EF-hand domain pair
XP_057801100.1 Pfam PF13833 EF-hand_8 Domain 436 467 5.2e-20 71.6 EF-hand domain pair
XP_057801100.1 Pfam PF00036 EF-hand_1 Domain 443 470 9.8e-34 113.1 EF hand domain
XP_057801100.1 Pfam PF13202 EF-hand_5 Domain 445 465 9.1e-24 82.5 EF hand
XP_057801100.1 Pfam PF13499 EF-hand_7 Domain 477 540 5.6e-35 120.2 EF-hand domain pair
XP_057801100.1 Pfam PF13833 EF-hand_8 Domain 478 503 5.2e-20 71.6 EF-hand domain pair
XP_057801100.1 Pfam PF13405 EF-hand_6 Domain 480 508 3e-27 92.4 EF-hand domain
XP_057801100.1 Pfam PF13202 EF-hand_5 Domain 482 502 9.1e-24 82.5 EF hand
XP_057801100.1 Pfam PF00036 EF-hand_1 Domain 482 506 9.8e-34 113.1 EF hand domain
XP_057801100.1 Pfam PF13833 EF-hand_8 Domain 495 541 5.2e-20 71.6 EF-hand domain pair
XP_057801100.1 Pfam PF00036 EF-hand_1 Domain 514 541 9.8e-34 113.1 EF hand domain
XP_057801100.1 Pfam PF13202 EF-hand_5 Domain 521 539 9.1e-24 82.5 EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057945117.1
TCTCTCTCCTCATTACTTTGCGTCCATGCATGGTTCTCTCTCCTCTCCAGACAACCACCTCAAGAAAAAACCTCCTCCCAAATTTCCTCCCTGCCCTCTTCCCCAGGGCACCACCAAACATGGGTAACTGCTGCTCCCAGGGCGAAGAAACCCCGCCGGACCCCAACGAGAAGGAGGAGGCGGAGAAGGAGAAGGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGCCCAGCCCCATGACCCCTCCTCCACCGGGCTCCCCG...

CDS

1 records

下载 CDS FASTA
LOC131016419
ATGGTTCTCTCTCCTCTCCAGACAACCACCTCAAGAAAAAACCTCCTCCCAAATTTCCTCCCTGCCCTCTTCCCCAGGGCACCACCAAACATGGGTAACTGCTGCTCCCAGGGCGAAGAAACCCCGCCGGACCCCAACGAGAAGGAGGAGGCGGAGAAGGAGAAGGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGCCCAGCCCCATGACCCCTCCTCCACCGGGCTCCCCGAAGCCCCCCTCAAAGCCCCCCGCCGAAAT...

Protein

1 records

下载 Protein FASTA
XP_057801100.1
MVLSPLQTTTSRKNLLPNFLPALFPRAPPNMGNCCSQGEETPPDPNEKEEAEKEKEEAEAEAEAEPSPMTPPPPGSPKPPSKPPAEMGSVLGRPMEDINELYEVGKELGRGQFGVTHLCTHKQTGEQFACKTIAKRKLANKEDVEDVRREVQIMYHLTGQPNIVDLKGAYEDKHSVYLVMELCAGGELFDRIIAKGHYTERAAASLMRTIVQIVHTCHTMGVIHRDLKPENFLLLNKEEDSPLKATDFGLSVFFKEGEEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器