Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002222`

染色体: Chr03 坐标: 34986555-35025734 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002222`
名称	SmilChr03G002222
描述	protein NLP6-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	34986555 - 35025734 / `-`

ID 对照

NCBI Gene ID	`LOC131016445`
GeneID	`131016445`
locus_tag	`-`
NCBI Name	`LOC131016445`
原始查询	`LOC131016445`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NLP6-like
产物	protein NLP6-like
Arabidopsis	`AT1G20640` (AT1G20640) Plant regulator RWP-RK family protein [Source:NCBI gene (formerly Entrezgene);Acc:838653] identity=24.9; qcov=0.464; evalue=1.16e-18; confidence=weak
Rice	`Os01g0236700` (NLP3) - identity=26.6; qcov=0.448; evalue=1.07e-18; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005515 (protein binding)
KEGG	-
Pfam	PF00564 (PB1); PF02042 (RWP-RK); PF22922 (GAF_NLP)
InterPro	-
eggNOG	-
NR	GeneID:131016445

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057801123.1`
2	Cytosol	细胞质基质	0.80000	`XP_057801124.1`
3	Nucleus	细胞核	0.60000	`XP_057801118.1`
4	Chromosome	染色体	0.00000	`XP_057801118.1`
5	Centromere	着丝粒	0.00000	`XP_057801118.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:34986779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B42,B43,B90,B92
`Chr3:34986837`	`T`	`TTA`	2bp_insertion	frameshift_variant	2	B63,B81
`Chr3:34986837`	`T`	`TTA`	2bp_insertion	CDS_variant	2	B63,B81
`Chr3:34986840`	`T`	`TCA`	2bp_insertion	frameshift_variant	1	B138
`Chr3:34986840`	`T`	`TCA`	2bp_insertion	CDS_variant	1	B138
`Chr3:34986850`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	B77,B99,C26
`Chr3:34986850`	`C`	`CAT`	2bp_insertion	CDS_variant	3	B77,B99,C26
`Chr3:34986863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,B42,B43
`Chr3:34986923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:34987035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B107,B40,B49,C27
`Chr3:34987097`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	B94
`Chr3:34987097`	`TTC`	`T`	2bp_deletion	CDS_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801118.1

1078 aa

539

1078

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 241-393 aa PF02042 RWP-RK 908-995 aa PF00564 PB1 995-1074 aa

XP_057801119.1

1075 aa

538

1075

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 238-390 aa PF02042 RWP-RK 905-992 aa PF00564 PB1 992-1071 aa

XP_057801120.1

1075 aa

538

1075

GAF_NLP

RWP-RK

PB1

PF22922 GAF_NLP 241-393 aa PF02042 RWP-RK 905-992 aa PF00564 PB1 992-1071 aa

XP_057801121.1

1028 aa

514

1028

GAF_NLP

RWP-RK

PF22922 GAF_NLP 272-431 aa PF02042 RWP-RK 907-976 aa

XP_057801122.1

1025 aa

512

1025

GAF_NLP

RWP-RK

PF22922 GAF_NLP 272-431 aa PF02042 RWP-RK 904-973 aa

XP_057801123.1

997 aa

498

997

GAF_NLP

RWP-RK

PF22922 GAF_NLP 241-400 aa PF02042 RWP-RK 876-945 aa

XP_057801124.1

840 aa

420

840

GAF_NLP

PF22922 GAF_NLP 272-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801118.1`	Pfam	`PF22922`	GAF_NLP	Domain	241	393	2.8e-26	92.8	NLP protein GAF domain
`XP_057801118.1`	Pfam	`PF02042`	RWP-RK	Domain	908	995	2.6e-14	53.8	RWP-RK domain
`XP_057801118.1`	Pfam	`PF00564`	PB1	Domain	995	1074	3.9e-14	53.1	PB1 domain
`XP_057801119.1`	Pfam	`PF22922`	GAF_NLP	Domain	238	390	2.1e-26	93.2	NLP protein GAF domain
`XP_057801119.1`	Pfam	`PF02042`	RWP-RK	Domain	905	992	2.7e-14	53.7	RWP-RK domain
`XP_057801119.1`	Pfam	`PF00564`	PB1	Domain	992	1071	4.1e-14	53.0	PB1 domain
`XP_057801120.1`	Pfam	`PF22922`	GAF_NLP	Domain	241	393	2.9e-26	92.7	NLP protein GAF domain
`XP_057801120.1`	Pfam	`PF02042`	RWP-RK	Domain	905	992	2.7e-14	53.7	RWP-RK domain
`XP_057801120.1`	Pfam	`PF00564`	PB1	Domain	992	1071	3.9e-14	53.1	PB1 domain
`XP_057801121.1`	Pfam	`PF22922`	GAF_NLP	Domain	272	431	1.5e-23	83.9	NLP protein GAF domain
`XP_057801121.1`	Pfam	`PF02042`	RWP-RK	Domain	907	976	1.7e-15	57.6	RWP-RK domain
`XP_057801122.1`	Pfam	`PF22922`	GAF_NLP	Domain	272	431	1.4e-23	84.0	NLP protein GAF domain
`XP_057801122.1`	Pfam	`PF02042`	RWP-RK	Domain	904	973	1.7e-15	57.6	RWP-RK domain
`XP_057801123.1`	Pfam	`PF22922`	GAF_NLP	Domain	241	400	1.3e-23	84.1	NLP protein GAF domain
`XP_057801123.1`	Pfam	`PF02042`	RWP-RK	Domain	876	945	1.6e-15	57.7	RWP-RK domain
`XP_057801124.1`	Pfam	`PF22922`	GAF_NLP	Domain	272	431	1.1e-19	71.3	NLP protein GAF domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057945137.1
GGGTTTGCATAGGAAATTTCTTCCTAGTCTCATTGACTATTCCACAGGCGTACGCGTAGAGAGTATTATTGTAAAGAGTAAAGTTGAATGGAAATTAGATAGAGAAAGAGGTACCAAAATAATATGGATCGATTGCAATACAAAGAGGGTGTGTTGTCAATCCTAAAAGGAGGAATGGGATGGTACGACAGTTATGATGAAATCTCTGAATTCAAACAGCATTTGCACCAAGAAGAAGTCGGTTTGGCACACGAGAAATT...

XM_057945135.1
GGGTTTGCATAGGAAATTTCTTCCTAGTCTCATTGACTATTCCACAGGCGTACGCGTAGAGAGTATTATTGTAAAGAGTAAAGTTGAATGGAAATTAGATAGAGAAAGAGGTACCAAAATAATATGGATCGATTGCAATACAAAGAGGGTGTGTTGTCAATCCTAAAAGGAGGAATGGGATGGTACGACAGTTATGATGAAATCTCTGAATTCAAACAGCATTTGCACCAAGAAGAAGTCGGTTTGGCACACGAGAAATT...

CDS

7 records

下载 CDS FASTA

LOC131016445
ATGGATCGATTGCAATACAAAGAGGGTGTGTTGTCAATCCTAAAAGGAGGAATGGGATGGTACGACAGTTATGATGAAATCTCTGAATTCAAACAGCATTTGCACCAAGAAGAAGTCGGTTTGGCACACGAGAAATTAAAATATGGATGGGTTTTATATGAGACAGAGCAGAGGCAGTATTCATATTACACAAGACAACTCCAAGATAAGATCATAAAGCTGCTCAAACACATGGCATCGGAGTATCTTTCAAGGGGCTA...

Protein

7 records

下载 Protein FASTA

XP_057801118.1
MDRLQYKEGVLSILKGGMGWYDSYDEISEFKQHLHQEEVGLAHEKLKYGWVLYETEQRQYSYYTRQLQDKIIKLLKHMASEYLSRGYHYMMQFWGVVKEEGKHHHLSSSHLPFLVTQLSKGVCCWYRKQSRDEVYVVNVEADGGDEEQLGGVVGRVYRNKRPESSPDLRLYSAHDFPMRDKAAACGFKGYVAFPVFDSNTNQCYGVLELLSNSFSMLLDTYLLSELDRGLQIADLRSTHNCTTKRRKPESEIKEILELAK...

XP_057801119.1
MDPSQYEEGVLPILRRGKGWDERYYEISKFKEKLHQEEASLVHEGLNWGWVFYERERYSYYTCTVEAQDKIIKLLKHLASERLSTDYHYMMQFWGVVKEEGKHHHLSSSHLPFLVGFFLRKGVCWYRKQSRDAVYVVNIQGGDEEQLGGVVGRVYRNKRPESSPNLRLYSAHEFPMRDKAAACGFHSYLALPLFDSNTNQCYGVLELLSAGLSIINTDLLSKLDRGLQIADLRSTHNCTTKRRKPESEIKEILELAKKKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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