Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002241`

染色体: Chr03 坐标: 35333267-35335667 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002241`
名称	SmilChr03G002241
描述	probable glutathione S-transferase
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	35333267 - 35335667 / `+`

ID 对照

NCBI Gene ID	`LOC131016462`
GeneID	`131016462`
locus_tag	`-`
NCBI Name	`LOC131016462`
原始查询	`LOC131016462`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable glutathione S-transferase
产物	probable glutathione S-transferase
Arabidopsis	`AT3G09270` (GSTU8) glutathione S-transferase TAU 8 [Source:NCBI gene (formerly Entrezgene);Acc:820083] identity=58.6; qcov=0.905; evalue=1.13e-83; confidence=high
Rice	`Os01g0949800` (OsGSTU36) - identity=49.1; qcov=0.922; evalue=5.92e-73; confidence=high
GO	GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3); PF22441 (CLIC-like_N)
InterPro	-
eggNOG	-
NR	GeneID:131016462

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057801140.1`
2	Cytoplasm	细胞质	0.40000	`XP_057801140.1`
3	Nucleus	细胞核	0.00000	`XP_057801140.1`
4	Chromosome	染色体	0.00000	`XP_057801140.1`
5	Centromere	着丝粒	0.00000	`XP_057801140.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:35333429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,C27
`Chr3:35333434`	`CT`	`C`	1bp_deletion	frameshift_variant	111	A1,A11,A15,A16,A18,A19,A20,A21,A22,A4,A6,A8,B10,B105,B113,B114,B118,B12,B122,B123,B124,B125,B126,B127,B13,B132,B134,B138,B14,B140,B17,B24,B27,B3,B31,B34,B37,B38,B39,B4,B40,B41,B44,B46,B47,B48,B49,B51,B53,B55,B56,B58,B59,B60,B62,B66,B67,B7,B74,B75,B79,B88,B89,B91,B94,B95,B96,B97,B98,B99,C15,C17,C2,C24,C25,C26,C27,C29,C32,C33,C34,C39,C40,C41,C43,C44,C45,C46,C50,C52,C53,C54,C57,C60,C62,C63,C64,C66,C67,C68,C73,C74,C80,C81,C82,C86,C87,D10,D5,D6,D7
`Chr3:35333459`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D11
`Chr3:35333459`	`AT`	`A`	1bp_deletion	CDS_variant	1	D11
`Chr3:35333461`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	D11
`Chr3:35333461`	`GGC`	`G`	2bp_deletion	CDS_variant	1	D11
`Chr3:35333466`	`A`	`AG`	1bp_insertion	frameshift_variant	1	D11
`Chr3:35333466`	`A`	`AG`	1bp_insertion	CDS_variant	1	D11
`Chr3:35333554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:35333578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B52,C54
`Chr3:35333611`	`C`	`CA`	1bp_insertion	frameshift_variant	23	A14,A16,A20,A23,A25,A5,A7,B121,B124,B128,B130,B136,B138,B15,B26,B32,B45,B63,B80,B84,C46,C73,C84
`Chr3:35333633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,B99,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801140.1

232 aa

116

232

GST_N

CLIC-like_N

GST_N_3

GST_N_2

GST_C

PF02798 GST_N 25-95 aa PF22441 CLIC-like_N 29-98 aa PF13417 GST_N_3 30-97 aa PF13409 GST_N_2 31-95 aa PF00043 GST_C 136-211 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801140.1`	Pfam	`PF02798`	GST_N	Domain	25	95	1.9e-19	70.5	Glutathione S-transferase, N-terminal domain
`XP_057801140.1`	Pfam	`PF22441`	CLIC-like_N	Domain	29	98	1.8e-05	25.5	CLIC-like N-terminal domain
`XP_057801140.1`	Pfam	`PF13417`	GST_N_3	Domain	30	97	7.9e-17	62.1	Glutathione S-transferase, N-terminal domain
`XP_057801140.1`	Pfam	`PF13409`	GST_N_2	Domain	31	95	1.1e-14	55.5	Glutathione S-transferase, N-terminal domain
`XP_057801140.1`	Pfam	`PF00043`	GST_C	Domain	136	211	4.6e-12	46.7	Glutathione S-transferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945157.1
AACCAGACTTTCCAGTAAAATTCAAACCAATGTCAAATTAATTAGAACAATTCTTTTCCCTAAAAAACAAGAAACTGCAACTATCCATTCAATTATTTTTCCAGTTTGTCTTATCTAACAAGCATACTCTATAAGATGTGCCCATCAAGGATAACCAAAAATCACATCTTAGAGAGAGAGAGAGGGAGAGAGATGGCAGAAGTGAAATTGTTGGGAGGATTGGGGTATAGCCCATACGTGAATAGAGTGGAAATGGCCCT...

CDS

1 records

下载 CDS FASTA

LOC131016462
ATGTGCCCATCAAGGATAACCAAAAATCACATCTTAGAGAGAGAGAGAGGGAGAGAGATGGCAGAAGTGAAATTGTTGGGAGGATTGGGGTATAGCCCATACGTGAATAGAGTGGAAATGGCCCTTAAAATGAAAGGAGTTGAATATGAATACATAGCAGAAGATGTGAAAAACAAGTCACCTCTTCTTTTACAGTACAATCCGATTCACAAAAAAGTACCTGTTTTGGTGCATAATGGCAAATCCATTGCTGAATCATT...

Protein

1 records

下载 Protein FASTA

XP_057801140.1
MCPSRITKNHILERERGREMAEVKLLGGLGYSPYVNRVEMALKMKGVEYEYIAEDVKNKSPLLLQYNPIHKKVPVLVHNGKSIAESLIIVEYIDEVWEGPSILPKDPYQRAMTRFWAKFIDEKCIPTLWKACWSTGEDQQKSKEESTEALKFLENEIKGKKFFGGENIGVVDIAANFIGYWLPIISEVVGCELMTHENFPNMCRWANDYCNDNFVKENLPKKEALLQRFKPK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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