当前解析结果
SmilChr03G002247| 统一新 Gene ID | SmilChr03G002247 |
|---|---|
| 名称 | SmilChr03G002247 |
| 描述 | protein DETOXIFICATION 44, chloroplastic-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 35406488 - 35415709 / + |
| NCBI Gene ID | LOC131016470 |
|---|---|
| GeneID | 131016470 |
| locus_tag | - |
| NCBI Name | LOC131016470 |
| 原始查询 | LOC131016470 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 44, chloroplastic-like |
| 产物 | protein DETOXIFICATION 44%2C chloroplastic-like |
| Arabidopsis | AT2G38330 (AT2G38330)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:818413] identity=45.7; qcov=0.734; evalue=3.46e-07; confidence=low |
| Rice | Os10g0206800 (OsFRDL2)- identity=61; qcov=0.287; evalue=2.69e-10; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016470 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057801153.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057801153.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.40000 | XP_057801153.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801153.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801153.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:35406617 |
C |
T |
EMS_canonical_SNV | stop_gained | 83 | A11,A14,A16,A18,A19,A2,A20,A21,A23,A25,A4,A5,A8,B10,B104,B105,B107,B109,B114,B12,B121,B122,B124,B125,B128,B13,B130,B133,B136,B138,B15,B22,B25,B26,B3,B32,B35,B4,B42,B43,B44,B45,B48,B49,B5,B53,B55,B57,B62,B63,B64,B66,B69,B72,B77,B79,B80,B88,B90,B92,B94,C1,C24,C32,C34,C38,C40,C43,C44,C45,C46,C51,C54,C68,C71,C73,C77,C79,C84,C87,D10,D11,D5 |
Chr3:35406710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:35406747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr3:35406765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:35406931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B119,B139,B38,C82 |
Chr3:35406968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,D11 |
Chr3:35407025 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B2 |
Chr3:35407025 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B2 |
Chr3:35409618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr3:35409654 |
G |
GT |
1bp_insertion | frameshift_variant | 5 | B101,B102,B111,B50,B61 |
Chr3:35409654 |
G |
GT |
1bp_insertion | CDS_variant | 5 | B101,B102,B111,B50,B61 |
Chr3:35409667 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | B10,B111,B120,B139,B26,B28,B3,B30,B47,C32,C38,C41,C56,C68,C76,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。