Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002247

染色体: Chr03 坐标: 35406488-35415709 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002247
名称SmilChr03G002247
描述protein DETOXIFICATION 44, chloroplastic-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向35406488 - 35415709 / +

ID 对照

NCBI Gene IDLOC131016470
GeneID131016470
locus_tag-
NCBI NameLOC131016470
原始查询LOC131016470

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述protein DETOXIFICATION 44, chloroplastic-like
产物protein DETOXIFICATION 44%2C chloroplastic-like
ArabidopsisAT2G38330 (AT2G38330)
MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:818413]
identity=45.7; qcov=0.734; evalue=3.46e-07; confidence=low
RiceOs10g0206800 (OsFRDL2)
-
identity=61; qcov=0.287; evalue=2.69e-10; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016470

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057801153.1
2 Chloroplast membrane 叶绿体膜 0.80000 XP_057801153.1
3 Chloroplast thylakoid 类囊体 0.40000 XP_057801153.1
4 Nucleus 细胞核 0.00000 XP_057801153.1
5 Chromosome 染色体 0.00000 XP_057801153.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:35406617 C T EMS_canonical_SNV stop_gained 83 A11,A14,A16,A18,A19,A2,A20,A21,A23,A25,A4,A5,A8,B10,B104,B105,B107,B109,B114,B12,B121,B122,B124,B125,B128,B13,B130,B133,B136,B138,B15,B22,B25,B26,B3,B32,B35,B4,B42,B43,B44,B45,B48,B49,B5,B53,B55,B57,B62,B63,B64,B66,B69,B72,B77,B79,B80,B88,B90,B92,B94,C1,C24,C32,C34,C38,C40,C43,C44,C45,C46,C51,C54,C68,C71,C73,C77,C79,C84,C87,D10,D11,D5
Chr3:35406710 G A EMS_canonical_SNV CDS_variant 1 B2
Chr3:35406747 C T EMS_canonical_SNV CDS_variant 1 D4
Chr3:35406765 G A EMS_canonical_SNV CDS_variant 1 B19
Chr3:35406931 C T EMS_canonical_SNV CDS_variant 5 B100,B119,B139,B38,C82
Chr3:35406968 C T EMS_canonical_SNV CDS_variant 2 B94,D11
Chr3:35407025 TG T 1bp_deletion frameshift_variant 1 B2
Chr3:35407025 TG T 1bp_deletion CDS_variant 1 B2
Chr3:35409618 G A EMS_canonical_SNV CDS_variant 1 B117
Chr3:35409654 G GT 1bp_insertion frameshift_variant 5 B101,B102,B111,B50,B61
Chr3:35409654 G GT 1bp_insertion CDS_variant 5 B101,B102,B111,B50,B61
Chr3:35409667 C T EMS_canonical_SNV stop_gained 16 B10,B111,B120,B139,B26,B28,B3,B30,B47,C32,C38,C41,C56,C68,C76,D3

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057945170.1
TGTGTTGGTGCGCAGCACCAACTTAGCCACCTTTTCTCCATTCATGCAAATTACTGCTCCAACTCATACTCGCCGATTCACTACAGGTGTTCGATGAAATGCGCCAATGGCTATGGTTCGATTCGATTTCGAACGGTCGCAAAATCATCAGCAAATAAAAATCCGAGCACCATACCGGAGAAGCCGAAGCTGCCGATTCAAGGAAATCGGATCGATGATTCGGATCTGGAACCGTATCTTGATCAGAATTTGTTTTCCTC...
XM_057945172.1
TGTGTTGGTGCGCAGCACCAACTTAGCCACCTTTTCTCCATTCATGCAAATTACTGCTCCAACTCATACTCGCCGATTCACTACAGGTGTTCGATGAAATGCGCCAATGGCTATGGTTCGATTCGATTTCGAACGGTCGCAAAATCATCAGCAAATAAAAATCCGAGCACCATACCGGAGAAGCCGAAGCTGCCGATTCAAGGAAATCGGATCGATGATTCGGATCTGGAACCGTATCTTGATCAGAATTTGTTTTCCTC...

CDS

3 records

下载 CDS FASTA
LOC131016470
ATGAAATGCGCCAATGGCTATGGTTCGATTCGATTTCGAACGGTCGCAAAATCATCAGCAAATAAAAATCCGAGCACCATACCGGAGAAGCCGAAGCTGCCGATTCAAGGAAATCGGATCGATGATTCGGATCTGGAACCGTATCTTGATCAGAATTTGTTTTCCTCCGTTATGCATCGTCTTCGGGCGGGGATTAAACTAGATGGACTTGGTATGGAGATTCTCTCGATTGCACTTCCTGCAGCTCTGGCCCTTATAGC...
LOC131016470
ATGAAATGCGCCAATGGCTATGGTTCGATTCGATTTCGAACGGTCGCAAAATCATCAGCAAATAAAAATCCGAGCACCATACCGGAGAAGCCGAAGCTGCCGATTCAAGGAAATCGGATCGATGATTCGGATCTGGAACCGTATCTTGATCAGAATTTGTTTTCCTCCGTTATGCATCGTCTTCGGGCGGGGATTAAACTAGATGGACTTGGTATGGAGATTCTCTCGATTGCACTTCCTGCAGCTCTGGCCCTTATAGC...

Protein

3 records

下载 Protein FASTA
XP_057801153.1
MKCANGYGSIRFRTVAKSSANKNPSTIPEKPKLPIQGNRIDDSDLEPYLDQNLFSSVMHRLRAGIKLDGLGMEILSIALPAALALIADPITSLVDTGFVGHIDLLNWLQLVCRVLFSTLFLNYSMSRCSMSQHLLLLKSRHLL
XP_057801154.1
MKCANGYGSIRFRTVAKSSANKNPSTIPEKPKLPIQGNRIDDSDLEPYLDQNLFSSVMHRLRAGIKLDGLGMEILSIALPAALALIADPITSLVDTGFVGHIDLLNWLQLVCRVLFSTLFLNYSMSRCSMSQHLLLLKSRHLL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器