Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002256`

染色体: Chr03 坐标: 35498895-35502884 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002256`
名称	SmilChr03G002256
描述	importin subunit beta-1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	35498895 - 35502884 / `-`

ID 对照

NCBI Gene ID	`LOC131016476`
GeneID	`131016476`
locus_tag	`-`
NCBI Name	`LOC131016476`
原始查询	`LOC131016476`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	importin subunit beta-1-like
产物	importin subunit beta-1-like
Arabidopsis	`AT5G53480` (AT5G53480) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835429] identity=60.5; qcov=1; evalue=0; confidence=high
Rice	`Os05g0353400` (OsImpbeta1) - identity=67.2; qcov=0.993; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006606 (protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0031267 (small GTPase binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF03810 (IBN_N); PF13513 (HEAT_EZ); PF25574 (TPR_IMB1); PF25780 (TPR_IPO5)
InterPro	-
eggNOG	-
NR	GeneID:131016476

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801159.1`
2	Cytoplasm	细胞质	1.00000	`XP_057801159.1`
3	Cytosol	细胞质基质	0.40000	`XP_057801159.1`
4	Nucleus membrane	核膜	0.40000	`XP_057801161.1`
5	Chromosome	染色体	0.00000	`XP_057801159.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:35499215`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B57,C22
`Chr3:35499215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C22
`Chr3:35499216`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B57,C22
`Chr3:35499216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C22
`Chr3:35499338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:35499386`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	C2
`Chr3:35499386`	`CAG`	`C`	2bp_deletion	CDS_variant	1	C2
`Chr3:35499500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B117,B134,B44,B9,C44
`Chr3:35500148`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C2
`Chr3:35500148`	`GC`	`G`	1bp_deletion	CDS_variant	1	C2
`Chr3:35500909`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C23
`Chr3:35500909`	`GT`	`G`	1bp_deletion	CDS_variant	1	C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801159.1

908 aa

454

908

IBN_N

TPR_IPO5

HEAT_EZ

TPR_IMB1

PF03810 IBN_N 23-103 aa PF25780 TPR_IPO5 110-266 aa PF13513 HEAT_EZ 382-437 aa PF25574 TPR_IMB1 460-808 aa

XP_057801161.1

874 aa

437

874

IBN_N

TPR_IPO5

HEAT_EZ

TPR_IMB1

PF03810 IBN_N 23-103 aa PF25780 TPR_IPO5 110-266 aa PF13513 HEAT_EZ 382-437 aa PF25574 TPR_IMB1 460-835 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801159.1`	Pfam	`PF03810`	IBN_N	Repeat	23	103	6.1e-10	39.7	Importin-beta N-terminal domain
`XP_057801159.1`	Pfam	`PF25780`	TPR_IPO5	Repeat	110	266	8.1e-09	36.7	IPO5-like, TPR repeats
`XP_057801159.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	382	437	5.2e-23	81.7	HEAT-like repeat
`XP_057801159.1`	Pfam	`PF25574`	TPR_IMB1	Repeat	460	808	4.3e-101	339.2	Importin subunit beta-1-like, TPR repeats
`XP_057801161.1`	Pfam	`PF03810`	IBN_N	Repeat	23	103	5.7e-10	39.8	Importin-beta N-terminal domain
`XP_057801161.1`	Pfam	`PF25780`	TPR_IPO5	Repeat	110	266	5.5e-09	37.2	IPO5-like, TPR repeats
`XP_057801161.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	382	437	3.5e-23	82.3	HEAT-like repeat
`XP_057801161.1`	Pfam	`PF25574`	TPR_IMB1	Repeat	460	835	1.3e-106	357.3	Importin subunit beta-1-like, TPR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945178.1
ATTTTAAATCCCCAAAGCAAAAGTGAGAAAAAGGAATTTAGGGTTTCGGATGTCAGCGGTCCGGGCATCGCGGGCAGCCAGAGTTGCTGCCCGTTAACTCAGTCACTATTATAAGCAATTCCTAACCCTTACTCCCGCTTATTCCCTCCATTCGAAATCAGTTCCCTCTTTCTCTCTCATACTCTATACAGACATCCGTGTTTTCCCTTACTAAAATTCGTATAATTTCTGTATTTATAGAATTGTAGAAGCATAAGAAA...

XM_057945176.1
AGAAAAAGGAATTTAGGGTTTCGGATGTCAGCGGTCCGGGCATCGCGGGCAGCCAGAGTTGCTGCCCGTTAACTCAGTCACTATTATAAGCAATTCCTAACCCTTACTCCCGCTTATTCCCTCCATTCGAAATCAGTTCCCTCTTTCTCTCTCATACTCTATACAGACATCCGTGTTTTCCCTTACTAAAATTCGTATAATTTCTGTATTTATAGAATTGTAGAAGCATAAGAAAACAAGTATAGAGTTAAACTCCGAGG...

CDS

2 records

下载 CDS FASTA

LOC131016476
ATGTCATTTGATATTACCCAGTATCTATTAGCTGCTCAATCACCAGAGGCAAAGGTCCGAAAGGAAGCAGAGGCTATACTCTGTAAGTTTCGGGAGGAAAACTTGCCACAATATCTTTTGTCATTGTCTGTTGAGCTCTCTAATGATGGAAAGCCTATTGAGACTCGTAGACTTGCTGGTATTGTCCTTAAGAACGACTTGGGTGCTAAAGATTCTGCAACAAAAGAACAGCCTGTGCAACTATGGGTTCAAATTGACAT...

Protein

2 records

下载 Protein FASTA

XP_057801159.1
MSFDITQYLLAAQSPEAKVRKEAEAILCKFREENLPQYLLSLSVELSNDGKPIETRRLAGIVLKNDLGAKDSATKEQPVQLWVQIDISFKSQIKNSLLNTLGSTFREASHTAAQVVAEIASIEIPRKEWPELVGSLLANMTRPDGSPPLRQATLETLGYVCEVISDEDLVQDEVNAILTAVVQGMNIAELNPEVRLAATKALYNALEFARTNFNNEMERNYIMKVICDAALAKEVVIRQAAFECLVSIASTYYEVLAPYM...

XP_057801161.1
MSFDITQYLLAAQSPEAKVRKEAEAILCKFREENLPQYLLSLSVELSNDGKPIETRRLAGIVLKNDLGAKDSATKEQPVQLWVQIDISFKSQIKNSLLNTLGSTFREASHTAAQVVAEIASIEIPRKEWPELVGSLLANMTRPDGSPPLRQATLETLGYVCEVISDEDLVQDEVNAILTAVVQGMNIAELNPEVRLAATKALYNALEFARTNFNNEMERNYIMKVICDAALAKEVVIRQAAFECLVSIASTYYEVLAPYM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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