当前解析结果
SmilChr03G002264| 统一新 Gene ID | SmilChr03G002264 |
|---|---|
| 名称 | SmilChr03G002264 |
| 描述 | BAG family molecular chaperone regulator 4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 35641720 - 35644842 / - |
| NCBI Gene ID | LOC131016484 |
|---|---|
| GeneID | 131016484 |
| locus_tag | - |
| NCBI Name | LOC131016484 |
| 原始查询 | LOC131016484 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BAG family molecular chaperone regulator 4-like |
| 产物 | BAG family molecular chaperone regulator 4-like |
| Arabidopsis | AT3G51780 (BAG4)BCL-2-associated athano 4 [Source:NCBI gene (formerly Entrezgene);Acc:824341] identity=40.7; qcov=0.499; evalue=3.22e-42; confidence=medium |
| Rice | Os01g0831200 (OsBAG4)- identity=45.5; qcov=0.556; evalue=1.31e-47; confidence=medium |
| GO | GO:0000774 (adenyl-nucleotide exchange factor activity); GO:0005737 (cytoplasm); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF00240 (ubiquitin); PF02179 (BAG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016484 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057801171.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057801171.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801171.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801171.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801171.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:35642026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B42,B43,B90,B92 |
Chr3:35642039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:35642043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B127,C13 |
Chr3:35642065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B127,C13 |
Chr3:35642068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B47,B77,B99,C26,C33 |
Chr3:35642247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr3:35642386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr3:35642388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,B88,B90 |
Chr3:35642486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B53,C73 |
Chr3:35642494 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | D9 |
Chr3:35642494 |
GC |
G |
1bp_deletion | CDS_variant | 1 | D9 |
Chr3:35643016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B51,B59,C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801171.1PF00240
ubiquitin 33-99 aa
PF02179
BAG 124-199 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801171.1 |
Pfam | PF00240 |
ubiquitin | Domain | 33 | 99 | 5.4e-07 | 30.0 | Ubiquitin family |
XP_057801171.1 |
Pfam | PF02179 |
BAG | Family | 124 | 199 | 2.1e-18 | 67.3 | BAG domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。