Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002285`

染色体: Chr03 坐标: 36027752-36030758 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002285`
名称	SmilChr03G002285
描述	uncharacterized SmilChr03G002285
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	36027752 - 36030758 / `-`

ID 对照

NCBI Gene ID	`LOC131016497`
GeneID	`131016497`
locus_tag	`-`
NCBI Name	`LOC131016497`
原始查询	`LOC131016497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:833740]; symbol=AT5G37620; hit=AT5G37620; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:833740]; symbol=AT5G37620; hit=AT5G37620; species=arabidopsis; confidence=low
Arabidopsis	`AT5G37620` (AT5G37620) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:833740] identity=27.1; qcov=0.818; evalue=2.66e-30; confidence=low
Rice	`Os09g0492800` - identity=30.5; qcov=0.182; evalue=1.59e-06; confidence=weak
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:131016497

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057801178.1`
2	Vacuole	液泡	0.40000	`XP_057801178.1`
3	Secreted	分泌到胞外	0.20000	`XP_057801180.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057801178.1`
5	Nucleus	细胞核	0.00000	`XP_057801178.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:36027869`	`C`	`CG`	1bp_insertion	frameshift_variant	56	A1,A18,A22,A23,B10,B102,B103,B107,B109,B12,B120,B122,B124,B129,B132,B134,B2,B3,B30,B44,B49,B5,B54,B56,B58,B60,B62,B74,B79,B94,B96,C12,C17,C24,C29,C30,C32,C34,C40,C41,C43,C5,C52,C57,C6,C67,C68,C7,C72,C75,C76,C77,C79,C87,D10,D5
`Chr3:36027877`	`AGC`	`A`	2bp_deletion	frameshift_variant	6	B113,B97,C14,C20,C37,D4
`Chr3:36028218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,A22,C34,C63,C67
`Chr3:36028313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:36028398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:36028408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B94
`Chr3:36028451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,C41
`Chr3:36028460`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C48
`Chr3:36028460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:36028536`	`AT`	`*`	1bp_deletion	CDS_variant	5	B132,B97,C14,C20,D4
`Chr3:36028555`	`AT`	`A`	1bp_deletion	frameshift_variant	16	B131,B22,B23,B63,B73,B74,B80,B83,B85,C47,C58,C78,C8,C85,C86,D11
`Chr3:36028678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801178.1

635 aa

318

635

C1_2

PF03107 C1_2 36-89 aa PF03107 C1_2 149-192 aa PF03107 C1_2 304-353 aa PF03107 C1_2 483-530 aa

XP_057801179.1

635 aa

318

635

C1_2

PF03107 C1_2 36-89 aa PF03107 C1_2 149-192 aa PF03107 C1_2 304-353 aa PF03107 C1_2 483-530 aa

XP_057801180.1

523 aa

262

523

C1_2

PF03107 C1_2 37-80 aa PF03107 C1_2 192-241 aa PF03107 C1_2 371-418 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801178.1`	Pfam	`PF03107`	C1_2	Domain	36	89	5.8e-40	136.1	C1 domain
`XP_057801178.1`	Pfam	`PF03107`	C1_2	Domain	149	192	5.8e-40	136.1	C1 domain
`XP_057801178.1`	Pfam	`PF03107`	C1_2	Domain	304	353	5.8e-40	136.1	C1 domain
`XP_057801178.1`	Pfam	`PF03107`	C1_2	Domain	483	530	5.8e-40	136.1	C1 domain
`XP_057801179.1`	Pfam	`PF03107`	C1_2	Domain	36	89	5.8e-40	136.1	C1 domain
`XP_057801179.1`	Pfam	`PF03107`	C1_2	Domain	149	192	5.8e-40	136.1	C1 domain
`XP_057801179.1`	Pfam	`PF03107`	C1_2	Domain	304	353	5.8e-40	136.1	C1 domain
`XP_057801179.1`	Pfam	`PF03107`	C1_2	Domain	483	530	5.8e-40	136.1	C1 domain
`XP_057801180.1`	Pfam	`PF03107`	C1_2	Domain	37	80	2.3e-31	108.6	C1 domain
`XP_057801180.1`	Pfam	`PF03107`	C1_2	Domain	192	241	2.3e-31	108.6	C1 domain
`XP_057801180.1`	Pfam	`PF03107`	C1_2	Domain	371	418	2.3e-31	108.6	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945196.1
TTTTTTTTTTTTAATTTGTTTCCTCTCAAGAGAAATTCGTCGATGAGTTGTAGCATTTTTGTGGTGAAAACAATCTTATATTCAAACCATTCATTTATTCAACTTGACGAAATGCTAATAAGCTTTGTAGATGACATGATATTTCATTTATCCTTTGCTTCTTTTTTCTTTAAACTTTGTCTTATTCCATACTTTTTTTTTCCATGCTTGAATGCAAATCTTTTCTCTCCACTCGTCATCTATAACTACCCAACCGTATT...

XM_057945195.1
GAGTTGTAGCATTTTTGTGGTGAAAACAATCTTATATTCAAACCATTCATTTATTCAACTTGACGAAATGCTAATAAGCTTTGTAGATGACATGATATTTCATTTATCCTTTGCTTCTTTTTTCTTTAAACTTTGTCTTATTCCATACTTTTTTTTTCCATGCTTGAATGCAAATCTTTTCTCTCCACTCGTCATCTATAACTACCCAACCGTATTGTATCAATTTTAATTATGCAATAGACTCAATTCTCTTACCGATC...

CDS

3 records

下载 CDS FASTA

LOC131016497
ATGAGAGAGAGCCTCTCTACATTGATAGAAATGGATGAATGGGAGGTAGATGACGATGAACTAGAGAGTTACTCAGTTGAGAAATTCAAGAAGAATGGTAAACATTTTAGTCATGATCATCCCCTGTCACGCATCATGTCCTGTGATGAAGATGAAGATGTTGATGAGAATAATGATGTGTGCAGCATTTGTGGGCTTCCAATTCTTTCTATCCCCTCCTACTCCTGTACCAATGCTTGCCAATTCTTCCTCCACGAACA...

Protein

3 records

下载 Protein FASTA

XP_057801178.1
MRESLSTLIEMDEWEVDDDELESYSVEKFKKNGKHFSHDHPLSRIMSCDEDEDVDENNDVCSICGLPILSIPSYSCTNACQFFLHEQCALKLPPKFIHPTHGPDFDGKHTLYMQKRSSSHNFTYKCEDCEFEIHPLVAVGGVEIKVKHKSHPLHPLVALGKQISCECDACGKKQDGFFFSCQDCNFWIHRDCTLLPNIITLLNHPQPFILAYSLPPFLIQDGCLICQKELLVRHNGIYFYPQSGIFTHVTCGMDKSAVSK...

XP_057801179.1
MRESLSTLIEMDEWEVDDDELESYSVEKFKKNGKHFSHDHPLSRIMSCDEDEDVDENNDVCSICGLPILSIPSYSCTNACQFFLHEQCALKLPPKFIHPTHGPDFDGKHTLYMQKRSSSHNFTYKCEDCEFEIHPLVAVGGVEIKVKHKSHPLHPLVALGKQISCECDACGKKQDGFFFSCQDCNFWIHRDCTLLPNIITLLNHPQPFILAYSLPPFLIQDGCLICQKELLVRHNGIYFYPQSGIFTHVTCGMDKSAVSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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